NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134487_102081

Scaffold Ga0134487_102081


Overview

Basic Information
Taxon OID3300014948 Open in IMG/M
Scaffold IDGa0134487_102081 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Washington
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5338
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Source Dataset Sampling Location
Location NameUSA: University of Washington
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056309Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0134487_1020811F056309N/ALSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFMD*

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