3300014948: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2

Overview

Basic Information

• IMG/M Taxon OID: 3300014948
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151659 | Ga0134487
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92504574
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F056309	Metagenome	137	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134487_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	47490
Ga0134487_100098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	44871
Ga0134487_100131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	38784
Ga0134487_100209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	28646
Ga0134487_100413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	18002
Ga0134487_102081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	5338
Ga0134487_103437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3648
Ga0134487_106350	Not Available	2265
Ga0134487_108751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1748

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134487_100086	Ga0134487_10008614	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFYG*
Ga0134487_100098	Ga0134487_10009839	F026489	LTGKLLFVDGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKRATPEKTEDSRLFGVKIF*
Ga0134487_100131	Ga0134487_1001311	F026489	TPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0134487_100209	Ga0134487_1002097	F026489	VASFADEKFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPKKTEDSRLFGVKIF*
Ga0134487_100413	Ga0134487_10041322	F056309	TCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKDREVASPLIN*
Ga0134487_102081	Ga0134487_1020811	F056309	LSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFMD*
Ga0134487_103437	Ga0134487_1034371	F056309	TCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*
Ga0134487_106350	Ga0134487_1063501	F099269	VLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0134487_108751	Ga0134487_1087513	F092227	DKGGHLAIMNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV*