NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119815_1000665

Scaffold Ga0119815_1000665


Overview

Basic Information
Taxon OID3300014815 Open in IMG/M
Scaffold IDGa0119815_1000665 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S21-03-R
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28370
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (32.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094006Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0119815_10006658F094006GAGGMWSALEPAGPTGALYESTVCVEAHIGELQTGGIACRGLFAFEGSNVLAVAELGAEAPHAIDMYDIALCKPLSELFAKELEYAFNFGA*

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