Scaffold Ga0134314_100004

Overview

Basic Information

• Taxon OID: 3300014711
• Scaffold ID: Ga0134314_100004
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39058
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (74.58%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F041187	Metagenome	160	Y
F058938	Metagenome	134	Y
F072119	Metagenome	121	Y
F099169	Metagenome	103	Y
F103130	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_10000410	F072119	GAG	MKYKLNTACDVDTDEPDVYILNLPAGFKFNHDPMSLCHTYAYDTMSELRADIKHSVIPCDCAECARMKGKL*
Ga0134314_10000416	F058938	AGGAG	MTHYDKTRVTFHHGNAFDAEGITPTPFATLTFNALVERELIDTICDLIRKHVNETHMDFCNIKLTSEDWDC*
Ga0134314_10000419	F099169	GGAG	MTHPLIAEALAPFRPLTYTEHYYIDLGYRYEQGKALEREYKEAQAEGPEARRLLYRGAMEAMMRAY*
Ga0134314_10000431	F103130	GGAG	MKRIDQWKAKLKVAKAELRIRNREANAATRALMHVETTIKQLEKKIDNYMAKP*
Ga0134314_10000436	F041187	AGGA	MTNMPDFSTWSQANLAKFAQEAYAKLCEQDDRIQMLQCDLKTAIEAYRALTKE*
Ga0134314_10000439	F006622	AGG	VNEYQKQFDLFLKVFVRMCVAWYAVGFLRFLPNDLSDKIVNKFLKMLGL*