Scaffold Ga0135354_122939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0135354_122939

Scaffold Ga0135354_122939

Overview

Basic Information
Taxon OID	3300014706 Open in IMG/M
Scaffold ID	Ga0135354_122939 Open in IMG/M
Source Dataset Name	Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	HiThru Analytics LLC
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	707
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue → Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa

Source Dataset Sampling Location
Location Name	USA: Washington, D.C
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081453	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135354_1229391	F081453	N/A	MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVK

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