Scaffold Ga0075342_1001535

Overview

Basic Information

• Taxon OID: 3300014320
• Scaffold ID: Ga0075342_1001535
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4412
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Fairfield, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.198971
  • Long. (^o): -122.026955
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011852	Metagenome / Metatranscriptome	286	Y
F080214	Metagenome	115	N
F082926	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075342_10015353	F082926	GGAGG	MPDISATEQSEQSNIVTWKATSIGTAIVLAVFLFLWL*
Ga0075342_10015354	F011852	N/A	MPLFSYFVVMGPMLALALIYVSDRIEPQGSPVPTSQIVGIAKPFKSEPERSPCTITGTNFAAAYKPVSARAATEPKPIRRADSLPQQRPADNAETRNVPRWKTIAQNPIDALMTIH*
Ga0075342_10015358	F080214	AGGA	MNADAGSRDPVATFGMARKKSRNSILLRFTDALKEPRRRQARRVIATYVHLLADRDAPNDDNHH*