Scaffold Ga0120045_100085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120045_100085

Scaffold Ga0120045_100085

Overview

Basic Information
Taxon OID	3300013782 Open in IMG/M
Scaffold ID	Ga0120045_100085 Open in IMG/M
Source Dataset Name	Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	UCI
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1603
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097154	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120045_1000852	F097154	AGG	VAVDRRRLRKGDSYTPTSRGPALAKQRAASYRYNKQYKPFRTEQSPGTGGFGSGLETQIMRNQTKQFDRERAESLRPETEIQQSILDKIKTAGYQD*

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