3300013782: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1

Overview

Basic Information

• IMG/M Taxon OID: 3300013782
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118605 | Gp0137433 | Ga0120045
• Sample Name: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1
• Sequencing Status: Permanent Draft
• Sequencing Center: UCI
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4311040
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F007227	Metagenome / Metatranscriptome	355	Y
F008886	Metagenome / Metatranscriptome	326	Y
F017293	Metagenome / Metatranscriptome	241	Y
F068232	Metagenome	125	Y
F097154	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120045_100085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1603
Ga0120045_100189	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1217
Ga0120045_100359	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	997
Ga0120045_100419	Not Available	935
Ga0120045_101094	Not Available	638

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120045_100085	Ga0120045_1000852	F097154	VAVDRRRLRKGDSYTPTSRGPALAKQRAASYRYNKQYKPFRTEQSPGTGGFGSGLETQIMRNQTKQFDRERAESLRPETEIQQSILDKIKTAGYQD*
Ga0120045_100189	Ga0120045_1001892	F001416	MPLVKKRLFLTAGSTSDQVLAGSTYEYVDPNTVIRVAAAVDTAGTSATADTTMDFTVNNAEFSRNVSVSKLVDGEPFGASENSNYI
Ga0120045_100359	Ga0120045_1003591	F068232	MEYVNLIALACSFAAFVLSIIAGARVGKFQRSTADTDWA
Ga0120045_100359	Ga0120045_1003593	F008886	EGEPFGASENSNYILNNMVTTGAIRNRPIITFTNSTAATRTVDVAVFIGN*
Ga0120045_100419	Ga0120045_1004192	F007227	MKKLTKEEIGYKTTDKIRKMWLLNPHDHHMLYVRDDGSFYGFTHMKGEDPEEWFWEAHGIQTELFPPDPPKSHKFTQEQLDRAPHHNILEKYYGKDWKPVPQEGLGDHF*
Ga0120045_101094	Ga0120045_1010941	F017293	ILTYINTAALVVAVGGGTFAYFQRGKITESIMTEVQKQLPSLVKGAMPSIPSVPSSTGSVLPFK*