Scaffold Ga0163179_10196851

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10196851
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1540
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F018266	Metagenome / Metatranscriptome	236	N
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_101968512	F005743	AGGAGG	MRRNLIVYKVDYVNRHEGYNIQTGKFVRTKRIVMTPDEVDQTDGYWRNHRNVEKKFSKQMNGKEDGYWDSKYRVMRVRKA*
Ga0163179_101968513	F080091	GAGG	MSLKLWKFLSVRIKVEDHNGKIHWYDESDCNAHDIGIEWDIEDIINKQGGTFDEEEVGKKQDT*
Ga0163179_101968514	F018266	GAGG	MFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSSPDKRELLVLNKIYGGNQ*