Scaffold Ga0157608_1015108

Overview

Basic Information

• Taxon OID: 3300012709
• Scaffold ID: Ga0157608_1015108
• Source Dataset Name: Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES134 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1999
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.099
  • Long. (^o): -89.405
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007222	Metagenome / Metatranscriptome	355	Y
F020512	Metagenome / Metatranscriptome	223	Y
F105189	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157608_10151081	F020512	N/A	QIEGVDFASSPYRMGRSLLNRVIGLLGNYIDVDTMVG*
Ga0157608_10151085	F007222	GGAG	MADTKGRGTYAITVDPYEFKNLLGLLSSFPAEYQQLVRDRAQPMSQRLAGQLMMSGLSAPAPQTKLVVQTIKSPRDRLIRVDIGGPKKVGRPYGGETSKSGKGKVRRQAAPAGALLWGTEYGSHGGVDSIGRTFTNRFKTPYNKRGYWIAPAVDFYVPVVAREYALMVQQIAKELRLD*
Ga0157608_10151086	F105189	GAGG	MAGIPKIKITFDADFDELKKGVKGAQNEVEGFGSKMGGFAKKAGAAFAV