Scaffold Ga0157210_1000190

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000190
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30350
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (74.29%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F002869	Metagenome / Metatranscriptome	524	Y
F009605	Metagenome / Metatranscriptome	315	Y
F010245	Metagenome / Metatranscriptome	306	Y
F011276	Metagenome	292	Y
F017266	Metagenome	241	Y
F056313	Metagenome / Metatranscriptome	137	Y
F068748	Metagenome / Metatranscriptome	124	Y
F093757	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_100019018	F011276	GGAG	MIKGLMGTCGVTVSAGNTSLPYVGPNTSNPMTGMLRINNTEMEVFNGSNWQQISTSYATVSLDQEVLDVIQWARTQRTMALNRMTLAQNNPALMKALEAVKRAEDNFELLSKFVEYDNTTSPT*
Ga0157210_100019029	F001008	GAGG	MSKAKHKPYQWIDGETADRITSLNLKDYRSYLKKELAQWKKNPKTEDNPDGYWLHPEDVSGNIRRIEALNLIINDFIETSDDIK*
Ga0157210_100019034	F017266	N/A	MIGRQMGKSYVNNLIKNWYQTMAPAPTIKWQRLPGLKLQAYTDDVAPRGFERGLNEADMDPIQVWTEECRCGKRMSFNIWHFKNEKQITMFLIRWAS*
Ga0157210_100019036	F002869	GGAG	MTNEITTEMLDRVIAHCEQNAFWGQGSAIQRMQDFYFEKTRSSLNEVWPESFTLEDLAQALGIEQVRYRIYYSPDNLTLRLFVFRPHCTYSEEKTMLDLGFVIAQDGDSNNIPNNESILY
Ga0157210_100019044	F009605	AGGA	MKSILNSIWSVLEAFGQARAAATLARIGDIEGAKAVYK*
Ga0157210_100019049	F010245	N/A	MTKRTARKDSNYVIYVATHNGLAYIGLTRKGSVTVAKAVKERWRKHISRARHEDRDWEIYRYIKKGNWTDWSHEVITVIRGRAEAYAYERELVKQIQPELNDQYL*
Ga0157210_100019052	F068748	GGAGG	MITPDTLKTLTTFSAPALTRAARDGGYKGPAFSSCKFLGITNGGQFCYMAVFLVEGGTDSTKIFLTHTGSRVIVDYQLTEAF*
Ga0157210_100019059	F056313	GGAG	MRIEGLTEHQVELLDTMWEIQEFDELEAWMLTLSRADQRECENLQRLVILETFEELMADSKYPEANRVIDKIRNL*
Ga0157210_100019062	F093757	AGGA	MKTNRDKNKEHDSREILRVRPKQAAYDFKPLESVIRQWITSSK*