Scaffold Ga0157210_1000001

Overview

Basic Information

• Taxon OID: 3300012665
• Scaffold ID: Ga0157210_1000001
• Source Dataset Name: Freshwater microbial communities from Talbot River, Ontario, Canada - S11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171535
• Total Scaffold Genes: 252
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (21.03%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Douro-Dummer, Ontario
• Coordinates
  • Lat. (^o): 44.4982
  • Long. (^o): -79.1546

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008881	Metagenome / Metatranscriptome	326	Y
F014119	Metagenome / Metatranscriptome	265	Y
F015596	Metagenome / Metatranscriptome	253	Y
F023591	Metagenome / Metatranscriptome	209	Y
F055555	Metagenome / Metatranscriptome	138	Y
F059772	Metagenome / Metatranscriptome	133	Y
F061681	Metagenome / Metatranscriptome	131	Y
F073275	Metagenome / Metatranscriptome	120	Y
F081025	Metagenome / Metatranscriptome	114	Y
F091633	Metagenome / Metatranscriptome	107	Y
F100713	Metagenome	102	Y
F104786	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_1000001127	F015596	N/A	MRLYIYYNADDKTKEPHGKLEAINLEDAILIAAHIKQMPVNEFLKIFTVEEWKRDLKK*
Ga0157210_1000001154	F059772	AGCAGG	MDNFDLKKYLAENKLNEAAGYVLYDTAGQMISQVGLFTQELADELEAEGRGNLSRFFDTPEEKAELIKISEAYPAYLAKVKAMMDELMNDPMYQVAVGDAGRNSNPLEKAYYRAKNI*
Ga0157210_1000001171	F061681	N/A	MQDKSIINWELHQKVMAKKRTIKICTGVGLNMFFPEYVTIELTDIDTEIKKPKTTKKNG*
Ga0157210_1000001176	F008881	N/A	MKVVVCINDSRLPEGAKVIKGKEYEVESEYINALDQRVYIIRGIVNEGTTKMGMRWIGYDAQRFADPETLMTEVKEHAYAEA*
Ga0157210_1000001178	F014119	N/A	MKITKEAIAKTLKPAMNVIIVVAVGTSMFKLGGMYQASQKEDTKVENPYAHAFSPEEISIAVNESNELIMIERATGKYIVYSDQIGQTIFGMYANRIHQEVANAGK*
Ga0157210_1000001179	F100713	N/A	MTFRKKTKTKFKSFLRRLGLLCKKPTEPSKRIRISKTINPDGTSTEHGRLTEQPLFEGNTFESELHIYNEIKKSVKKNK*
Ga0157210_100000146	F055555	N/A	MSTTQFIQDNKTRIQNIDGNLDDANITLLGDGGRLEFYYFEDGVLVGSKVKTYTW*
Ga0157210_100000150	F073275	AGG	MTKYLKVDLIDCYGISLCDTKEEVIEGCGYDVDEITFEELLVRMEGVYEIVEVTGDFKLKWICQE*
Ga0157210_100000151	F081025	N/A	MTVQELINELNKVENKNLKVVVQGCDPTDWVYNNDVEGVGVQNVYDEEIGYRRRFVIDGGMF*
Ga0157210_100000153	F104786	AGGA	MLKEAIELLSKFGLVDGNSLPDSTPGHQYQFRSSSPNLIVPAPGMKTTISGFLKDNGFTVKPMGTMLKISK*
Ga0157210_100000158	F091633	N/A	MTKTQKQKEIIKRFLTFVNEVFPNYEMDDCGDGGRITFFPINGTSDDQIDFQRSRLDLCVLNCASDQAKQDCMVMEGMLKVIQIEVEAL*
Ga0157210_100000178	F023591	AGGA	MSCSGGKSTAKGRYNKANNLKQPISYTIDSKGNVKPIYSTNKK*