Scaffold Ga0157338_1009988

Overview

Basic Information

• Taxon OID: 3300012515
• Scaffold ID: Ga0157338_1009988
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 950
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9076
  • Long. (^o): -79.0506
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055971	Metagenome / Metatranscriptome	138	Y
F072302	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157338_10099882	F072302	AGG	VTPRNSAQVPLVQDGEDQAARLDRFRATHPDVPVLLMGTRPRAWVGGQKIEHPTLRGLLDDLEEIFRPDTHASRPETPQ*
Ga0157338_10099883	F055971	N/A	ALAALEEAWADGCHHAFSVDHGTWSAVSSAGEVLTGATPDELDQKIRACWQAMQ*