NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120174_1003679

Scaffold Ga0120174_1003679


Overview

Basic Information
Taxon OID3300012008 Open in IMG/M
Scaffold IDGa0120174_1003679 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A39_80cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5967
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072036Metagenome / Metatranscriptome121Y
F080015Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0120174_10036794F080015GGAGVSTTLVLNPRDDVRFVALAESLASDGIDSPLELQERLRRDYPDAVVRARELTGEAFTIWYVYRDGHWVPGLGGVPAGG*
Ga0120174_10036795F072036GGAGGMSELEHDLRATAEDIAADAARLTGIEEEKAGMAPDDPRLVELSVESERLARRLVPKTAAERELAERASEPGVATD*

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