NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119931_1005277

Scaffold Ga0119931_1005277


Overview

Basic Information
Taxon OID3300011984 Open in IMG/M
Scaffold IDGa0119931_1005277 Open in IMG/M
Source Dataset NameFreshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hong Kong
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058099Metagenome / Metatranscriptome135Y
F080645Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0119931_10052772F080645GGAGMTLTSEQVQDLLVAHCNRVIDNMDMDDLVSYAVQMMMSSFDQNPGQGDTDVDMLIEDIWVAEGEDDDSTQEFIAGVVGNELAEEIVKTTQF*
Ga0119931_10052775F058099N/AMTKQFLISQLRQGNNGQRILEILDALADGMDSSESREDLSPTLDEIKF*

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