Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1308 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1308 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17990
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (32.26%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17990

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (32.26%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F048316	Metagenome / Metatranscriptome	148	Y
F099147	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_130811	F001775	N/A	MKDLLDDERIKIAVLAFLAGVILAFIVFPKREVETVYKTNIERLTDTLYITSTDTIYIPKTKIKTKVLRDTFLIDFKPKISLFETTFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIIKKPKGIYLGAGVNSLIDPSVKVAYLDNKYLFQYQYQPVTKIHTLGVSKKLF*
Ga0153703_130816	F048316	AGG	MKRFFSWAKGFLSENGEASSKRLVGVISAITLSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPTNENKS*
Ga0153703_130819	F014605	N/A	MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKEDPIRLYELAKKVYYSDGDMEISKSDADLMKDKVKAKGFTVLVLGPLYEALKEK*
Ga0153703_13082	F030017	GAG	METCEIMQKVKDLYLEGFTRKKIAKVLGLDDQKVGYLLYTKMKLHEIYPRKLMDENIFQILSDQQIRRILTLFTYGYEIREIAEDQNLEFRKVKKLIDVAESKNMIEKKV*
Ga0153703_13083	F024318	N/A	MKPHLYLGKFIQRPADLAPKGIASTYDKEKLPFNETWLRLWKLAR*
Ga0153703_130831	F099147	N/A	DLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK*
Ga0153703_13089	F008081	N/A	MEETEILNPFGFGNASRVIDENRKPADYWQDFFDLHQVLAENEFYVLFDDGLLVKKGRSKFTTSQYIKGDKFTSFAKVYARFYQPGSGRINRD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1308

Overview

Ecosystem & Geography

Associated Families

Sequences