Scaffold Ga0153703_1185

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1185
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22917
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F044503	Metagenome	154	Y
F055561	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_118516	F024318	N/A	MKPQLYLGKFIQRPADLAPKGVASTYDKEKLPFNETFERLWKLAR*
Ga0153703_118517	F030017	GAG	METSEIMDKIKALYLEGFTRKKIAKELGLDHEKIGYLIYTKMKLHEIYPRKLMDENIFYILTDYQISRILTLATYGYECKEIAEDQKLEFRKVKKLLDVAEAKKMIQKKV*
Ga0153703_118520	F044503	N/A	MRRRNLTEYEKELIFEMWQDRIPTKVIALELGVSYMCIFNQLKKRYLVG*
Ga0153703_118522	F008073	N/A	MRKTILKHLQKMEFVCGLKQFKEYKEQDATELIECLNDLFKKFGWMTDERVDYILHAGLRGQYGDFYHVNEKTVNGWINQYYQHHQSQIVMEIQNQNNKDKEPSAEEIEYWLEVGKNIFRENYQHAKETGYCKDIAEWGVNWFNKFQEKGILKPWLYNLEEIEKEVRKELRLTKHWVEESSVGAKSKNKIWKLFILESIKENKNLDKLI*
Ga0153703_118545	F055561	N/A	MSFAEYQSIAYGHQMRESKQENLFRSIWVQLNNVNVTKKSDLIRKPEKFWKIPLLDAKPVHIPTQAEKQKAYEIGLTWQNLKFEEEAIFDTITKTIQ*