Scaffold Ga0153697_1061

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1061
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34735
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F025684	Metagenome	200	Y
F100683	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_10614	F025684	AGGA	MTDDDDELALPERYAERAEATLAYRLMEYLEFLGVIGKDHVSYLRWPPIELIEDAEKALKE*
Ga0153697_106147	F100683	AGG	MTDHAAATAEALEKVIAMLKAGQSPEDLGSMVILIGRMMARRT*
Ga0153697_10617	F009516	N/A	MGTLEVGEVATMPATKKGDVKRTSRNVSQYGIRNGKMFKCRTVEGVTFITRLR*
Ga0153697_10618	F014495	AGGA	MIKPQQAAPMGRKHRVSSDSAWPLRGADGKTFAERRATHEKEQAKCQDQ*