Scaffold Ga0153697_1020

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1020
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 55290
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (76.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F073074	Metagenome	120	N
F074575	Metagenome	119	Y
F081069	Metagenome	114	Y
F104461	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_102014	F074575	GGA	MAKINNQPAATNPGIPPNRSKVDTVNMSVGNISKNAGNETVKTSGIVTRGNGAATKGTMARGPMA*
Ga0153697_102025	F001538	GAG	MIETIKLFPTVQPSGYPDKHDLAQAKLEKQHEVNKTLEIAKQKQTELQDIGFEIYCKKVVQERLRMEIFNNRKLDIYV*
Ga0153697_102048	F081069	AGG	MSDRQWIILNQLGGAEWLRNILDKKAPMPKQYYDKLLQEQKND*
Ga0153697_102059	F073074	GGA	MDIILKTAKDATRLLNAIRAQYIIVLPTGEQIIEGDLKLHVPDATPPKKKRAQSRNPLGYLRGHLMPYLKPMKVGDVCVIPIPNNSDVKEIQGSAASMSNVLWGKGNYKTMRNNETGNVEVLRMG*
Ga0153697_102069	F104461	GGA	MKPNLLDLDLDPELMQSFVEQVKQTSMAKTPAQMHELQAKRKANVKTSLRQTRDQRAFDVRVKSLKPNEDALRKLRSLAVGNYFVVPATEAVAIRNMTARELRDRGIKYTTTKFVFGHYEYIKVQRYNPIHDK*