Scaffold Ga0151620

Basic Information
Taxon OID	3300011268 Open in IMG/M
Scaffold ID	Ga0151620_1000197 Open in IMG/M
Source Dataset Name	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23568
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (31.03%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

23568

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (31.03%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location
Location Name	San Francisco Estuary Delta, California, USA
Coordinates	Lat. (^o)	37.986944	Long. (^o)	-121.523611	Alt. (m)	Depth (m)	.2
Location on Map

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Source Dataset Sampling Location

Location Name

San Francisco Estuary Delta, California, USA

Coordinates

Lat. (^o)

37.986944

Long. (^o)

-121.523611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016639	Metagenome / Metatranscriptome	245	Y
F020890	Metagenome / Metatranscriptome	221	Y
F021974	Metagenome / Metatranscriptome	216	Y
F031856	Metagenome / Metatranscriptome	181	Y
F039396	Metagenome / Metatranscriptome	164	Y
F041726	Metagenome / Metatranscriptome	159	Y
F057119	Metagenome / Metatranscriptome	136	Y
F058109	Metagenome	135	Y
F085647	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100019710	F057119	N/A	MTFLLGMGIGSLLTIGAAFIFSADQNVLDEGDKLD*
Ga0151620_100019716	F020890	N/A	MDRFDDLQIEEFSSFDFVEEMNDDLFEEEDNDKSFNKLINSNIDF*
Ga0151620_100019719	F085647	N/A	MLWQDRNGTWHSTVSAIDMKIERAMIAENANKVWEEKERSGDWLFEEMFGG*
Ga0151620_100019731	F021974	N/A	MSNTIVSEVYSYHTNWKEGKVNQMWIEQITDKECDNLFVAVAHNPRNGSTMEMSNPRTSYYETLQWVRNWCGTFCILPA*
Ga0151620_100019732	F041726	N/A	MNTYRLLIEYWVPDEDENLYEEKFIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV*
Ga0151620_100019740	F039396	AGGA	MTTTSFYNGDSYSKFDAYYEDCEHDDYMTAEDYERRQYERDGWNESRYDRQYY*
Ga0151620_100019741	F058109	N/A	MIETDFFILNGQQYQEFYTEASELGVSIDYYLMEFCHTEGPYVYTD*
Ga0151620_100019749	F016639	N/A	MSKQVLLSLLAQGNTGTEILSILDAIVSDNVSGFDYIESPQLESALGIATLEEIAF*
Ga0151620_100019752	F031856	N/A	MNKSYNLLYKGRKIYTNLTMEDCSEILQTFSERYHSGEEIDPNELEMEEIANG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151620_1000197

Overview

Ecosystem & Geography

Associated Families

Sequences