Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10672 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10672 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14404
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (91.30%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14404

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (91.30%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003182	Metagenome / Metatranscriptome	502	Y
F010982	Metagenome	296	N
F012452	Metagenome	280	Y
F095153	Metagenome / Metatranscriptome	105	Y
F097225	Metagenome	104	Y
F105053	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1067213	F097225	GGAG	MEKVQFVKITNPLNDEVTEHAIIDRGNGEFTSMLKSIYDEQQKAMTIDEPAAKSK*
Ga0151515_1067216	F095153	N/A	VTEAITAIGLIAATTVSSIAALYAAKSEKNSRPVSNGFADGIRADVREIRSLMIEHLKDHK*
Ga0151515_1067217	F105053	GGAG	MNEISIVIVMSIAAILWAAITYSVGYKEGERVGFSRGRAVTRHLSSRDKAAN*
Ga0151515_1067218	F012452	AGGCGG	MGFLDNYEGNKERTDRWIATYPEGRLEAHIIEFNADKGYVLIQAKAWRNQTEIEPAGIDYAYGYLAAFNANMKRWMIEDTSTSALMRVMALVMGGSEKATRETMQQVETMSTKVATADPKQDYDYWTTKHGDVPSFKNEDELTAAEKAQTIGGAIQEVTAQLGGEMLKEAPQCVHGHRVWREGVSAKTNKAWGNYSCVERKPNQCEPVWYVFTSDGTWKPQI*
Ga0151515_1067219	F000403	GGA	MSEFMEIINPQTMMAKLLQNGEVVEEYKIDQCDKCSILTRFDPFGYQKGYDSADNIIWFCRDCR*
Ga0151515_1067220	F010982	GGA	MIMVRLSRADEIVAANAGLARESRYGSNPKFKGNKGNFHHAITIHSEAAGAEIAAARYFGIEDFVPTVDTFKNEPDLRLGALGIEVKQTGHKAGHLIITDDDRDTDVAVLVVGESPTYYVVGWIPVSVAKKPRYKASDGSYWVSQINLQPIENLKRSQYANSGI*
Ga0151515_1067221	F003182	GGAG	MPILEFDCSICNKLYGKAKQRHGLKKSSELSMNEWFATCFGCGVFGIKIVDDSKIDEISL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10672

Overview

Ecosystem & Geography

Associated Families

Sequences