Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10205 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10205 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	27109
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (76.60%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

27109

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (76.60%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F006653	Metagenome / Metatranscriptome	367	Y
F026830	Metagenome / Metatranscriptome	196	Y
F056431	Metagenome / Metatranscriptome	137	N
F095135	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_102051	F056431	N/A	DHTADGRKYAQLLVNYAAVQISDQNEVGWMLRKDTIAGYQGGYNV*
Ga0151515_1020515	F001477	AGGGGG	VSNIYTIHPKKSPLILLYEVVDEDGRAEWGGHSAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQPLDITDIIKAASL*
Ga0151515_102052	F006653	AGGAGG	MSEGQLTNKYRDNLKTDELRADIDALKVDLTNFVGALLQSGIVELVKDETGEVVYKINKVVLVDESVQQD*
Ga0151515_1020528	F095135	AGGAG	MAQMKKPTPTPKKTPVKKKVLVMPSKISPSKMTPAQKARYLKNPERYDG*
Ga0151515_102054	F026830	AGGA	MVKGETVMPVPEGDITTTEILVPEVVPEAEEVEDDLPLVP*
Ga0151515_102056	F003784	GGA	MYDDDKARVGHNDTDFAAYGLSDLASTLRKSDPVDKASASTPLVDHLAVVGYRAMGVSTEDLTSFIEAFASLRANRVKGVGHEQYAIAQGQKFESFTTADTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0151515_102057	F004110	N/A	VARTIHRRYKAHVEFDDIKQELMAWAMTRIADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKRGYLQLEQDDQMILRLRHHERFTLQQIAQVLECATSTADRRCEKSLRRLQDNLGGISPWQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10205

Overview

Ecosystem & Geography

Associated Families

Sequences