Scaffold Ga0114934_10050633

Overview

Basic Information

• Taxon OID: 3300011013
• Scaffold ID: Ga0114934_10050633
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2141
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5275
  • Long. (^o): 25.4914
  • Depth (m): 482

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F014069	Metagenome / Metatranscriptome	266	N
F018266	Metagenome / Metatranscriptome	236	N
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114934_100506332	F005743	AGGAG	MKRNLIVYKVDYANKDENYNTHTGKFVKTKRIVMLPEEVNQTDGYWRNHSRVEKKFDKQMNGSENASWSDCKYRILRVRKA*
Ga0114934_100506333	F080091	GAGG	MSLKLWKLLSIRIKVEDHNGKIHWYDETDCDEHGLGIEYDITDIIKHQGGTLDEEEVGKKQDT*
Ga0114934_100506334	F018266	AGGAGG	VFRVILENKFRENPINLSRAVKLLYNQDFTGSIRKENLLWWKKYFLKVIHLPILYPKRGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNE*
Ga0114934_100506337	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKALPPYNQTSCIATVIIATNNALDKSREAKKSAETLQDISKATEERKAVNE*