Scaffold Ga0058701_10169691

Overview

Basic Information

• Taxon OID: 3300010395
• Scaffold ID: Ga0058701_10169691
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - Or.Ma.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1523
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044878	Metagenome	153	Y
F098541	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058701_101696911	F044878	N/A	MTGEKLNFLSLATSDGGSVAFGNGKSGTIVGIGKIG
Ga0058701_101696914	F098541	AGG	MLVASGDSTEDDERTKEEDAVVALMARSDSNSDDEPLDSLV*