NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F098541

Metagenome Family F098541

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098541
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 45 residues
Representative Sequence MLTAWGDSTEEDEGIEEEDAAVALMARSDSDSDDEPLDSLAQLKDK
Number of Associated Samples 8
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 66.67 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 2.91 %
Associated GOLD sequencing projects 4
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.087 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave
(93.204 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF14223Retrotran_gag_2 32.04
PF00098zf-CCHC 12.62
PF13976gag_pre-integrs 0.97



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.09 %
All OrganismsrootAll Organisms2.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300010395|Ga0058701_10169691All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha1523Open in IMG/M
3300010395|Ga0058701_10176998All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha1476Open in IMG/M
3300010395|Ga0058701_10203551All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha1328Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave93.20%
AgaveHost-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave6.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006020Agave microbial communities from Guanajuato, Mexico - Mg.Sf.eHost-AssociatedOpen in IMG/M
3300009144Agave microbial communities from Guanajuato, Mexico - Or.Sf.eHost-AssociatedOpen in IMG/M
3300010395Agave microbial communities from Guanajuato, Mexico - Or.Ma.eHost-AssociatedOpen in IMG/M
3300027766Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300030495Agave microbial communities from Guanajuato, Mexico - Or.Sf.e (v2)Host-AssociatedOpen in IMG/M
3300030498Agave microbial communities from Guanajuato, Mexico - Or.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300030501Agave microbial communities from Guanajuato, Mexico - Mg.Sf.e (v2)Host-AssociatedOpen in IMG/M
3300030515Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (v2)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0058704_1019195223300006020AgaveMLAAWGDSTEDDEGTEEEDAVVALMARSDSDSDDEHLDSLAQLKDKVYVV*
Ga0058704_1029575613300006020AgaveMLSAWGDSTEDEEGTEEEDAAVALMARSDSDLDDEPLDSLAQLKD
Ga0058704_1063025223300006020AgaveMPAAWGDTTEDDEASEEEAAVVALMAKSESDSNDEPVD
Ga0058704_1070101223300006020AgaveMLAAWGDSTEDEEGTEEEDAAVALMARSETESDDE
Ga0058704_1072866613300006020AgaveMLAAWGDSTEDEEGTEEEDAAVALMARSDSDSDDEPLDSLAQLKDKVR
Ga0058702_1005091113300009144AgaveMLAAWGDTTDDDEAFQEEEAVVALMARSESDSND*
Ga0058702_1005758323300009144AgaveMLAAWGDTIEDDEVSEEEEEVVLALMVRSESDSDDELVDSPSQLKVKVRGLNKPKLKCFSL*
Ga0058702_1008717113300009144AgaveMLAAWGDTTEEDEASEEKEAAVALMARSESDSDDELVDS
Ga0058702_1014283323300009144AgaveMLVAWGDSTEDDEVSEEEEVVVALMAGSESDSDDEPLESLA*
Ga0058702_1018078333300009144AgaveMLTAWGHTTEDDEASQEEEVVVALMARSESDSDDEPLDILAQLKE*
Ga0058702_1018533223300009144AgaveMLTASRDSTEEDEGTEEEDAAVALMARSDSDSDDEPLDSLA*
Ga0058702_1019521113300009144AgaveMLATWGDTIEDDKASEEEEAVVALMARSESDLDDKPLDSLA
Ga0058702_1020345733300009144AgaveMLTAWGDTIEDDEAFEEEEGAIALIARSESDSDDEPLDSLA*
Ga0058702_1024018313300009144AgaveMLAAWGDTMEEDEASKEEEAAVALMARSESNSDDEPVDNLTQLKEKVRCLNKAKL
Ga0058702_1026246223300009144AgaveMLAAWGDTIKDDEAFEEEEAAVALMARSESDSDD*
Ga0058702_1028033623300009144AgaveMLAAWGDSTEEDEGYEEEDATITLLARSGSDSDDEPLDSLTQLKDKV
Ga0058702_1028654423300009144AgaveMLAAWRDSTEEDEVTEEENAAIALMARSDSDSDDKPLDNLAQLKA*
Ga0058702_1030012823300009144AgaveMLAAWSDTTEDDEASEEEEAAVALMARSESDSDDEPLDSLAQLKVRGLNHVP*
Ga0058702_1030197513300009144AgaveMLAAWVDSTQKDEGTEEEDAAIALIARSDSDSDDEPLDSLT*
Ga0058702_1032181413300009144AgaveMLTAWGDSTEEDEGIEEEDAAVALMARSDSDSDDEPLDSLAQLKDK
Ga0058702_1034985913300009144AgaveVAAWGDTMEEDETSREEKAIVALMARSESDSDNEPMDSLSQLREKVRGLNKAKLEKLLFT
Ga0058702_1037914123300009144AgaveMLAAWGNSTEDDEASEEEGVAVALMARSESDSDDEPLERLA
Ga0058702_1042654823300009144AgaveMLAA*EDLTEDDEGTEEEDATLALMARSDSNSDDEPLDSLAQLKDK
Ga0058702_1046659113300009144AgaveMLVAWGDYTNEDEEIEEEDAAVALMARSDSDSDDEPLDSLV*
Ga0058702_1047134823300009144AgaveMLAAWGDSTEEDEGTEEEDAAVALMAKSDSDSDDE
Ga0058702_1050927523300009144AgaveMLAAWRDTTEEYEASKEEEVAVALMAKSESDSDDEPLESLA*
Ga0058701_1003447883300010395AgaveMLAAWGDSTEEDEGTEEEDPAVALMAKSDSDSDDDLSKA*
Ga0058701_1003979953300010395AgaveMLAAWGDTIEDDEVSEEEEEVVLALMVKSESDSDDELVDSPSQLKVKVRGLNKPKLKCFSL*
Ga0058701_1006575133300010395AgaveMLVAWGDLTKDDEASEEEEVVVALMARSESELDDEPLESLA*
Ga0058701_1007776943300010395AgaveMLAAWGDSTEEKEEIKEEEAAVALMARSDADDEPLDS*
Ga0058701_1011958813300010395AgaveMLAAWGDTTEDDESSEEEEVAVALMARTELDSDDEPLESLAQLKEKVY
Ga0058701_1014425213300010395AgaveMHAAWGDSTEEDEETKEEDAAVALMAGRDSDSDDERLDSLA*
Ga0058701_1016247733300010395AgaveMLAAWGDSTEDDEAAEEEAVVVALMARSESNSDDEPLESLARLKEKV*
Ga0058701_1016956733300010395AgaveMLAGWRDSTAEEEETEEEAAVALMARSDFDSNDEPLDSLA*
Ga0058701_1016969143300010395AgaveMLVASGDSTEDDERTKEEDAVVALMARSDSNSDDEPLDSLV*
Ga0058701_1017699833300010395AgaveMLVAWCDTIEDDEASDEEEVAIAFMARSESDSDDESLESLAQLKEKV*
Ga0058701_1018847333300010395AgaveMLAAWGDTTEDDEASEEEEVAVALMARSESDSDDEPLESL
Ga0058701_1020355143300010395AgaveMLVAWGDTIEDDEASEEEEAVIALMVRSELNSNDE*
Ga0058701_1021805023300010395AgaveVAAWGDTMEEDETSREEEAIVALMARSESDSDKEPMDSLSQLREKVRGLNKAKLEKFLFT
Ga0058701_1023357023300010395AgaveMLAAWDNSTKDDEAFEEEEVAVALMARSESDSDDEPLESLAPTQGKGTCL*
Ga0058701_1023984733300010395AgaveLVAWGDTIEDDEASEEEEAVVALMARSELDSDDKPLDSLAL*
Ga0058701_1025051623300010395AgaveMLAAWGDSTKEEEGTGEKEVAVALMARSDSESDNEPLDNLAQLRTRYVV*
Ga0058701_1026155323300010395AgaveMLTAWGDTTKDDKASEEEEVVVALMARSESDSDDEPLGSLAQLKEKV*
Ga0058701_1027085413300010395AgaveMLAAWGDSTEEDEEIEEEDAVVALMARSDFDLDDEPLDSLA*
Ga0058701_1031695323300010395AgaveMLAAWGDTAEDYEASDEEKVAVALMARSESDLDDEPLESLA*
Ga0058701_1033033133300010395AgaveMIAAWGDTTKADEAFKEEKAVMARSELDSNDEPLDSLAQLKEQVSGFNKS
Ga0058701_1035117813300010395AgaveMLAAWGDTTEDDEASEEEEAVVALMARSESDSNDESLWPCSI*
Ga0058701_1045086513300010395AgaveMLATWGDSTKEEEGTEEEEAAIALMARSDFDSDDEPLDSLAQL
Ga0058701_1046749333300010395AgaveLGDSTEEDEGIEEEYAVIALMARSDSDLDDEPLDSLAQLKDK
Ga0058701_1048637513300010395AgaveMLSTWGDSIEEDEGTEEEDTSVALRARSDSDSDDEPLNSLV*
Ga0058701_1048740723300010395AgaveMLAAWGDSTEEDEETEEEDVVIALMARSDSNSDDEPLDSLAQLKNKVRGSIK*
Ga0058701_1050436223300010395AgaveMLVAWGDTIEDDEASEEEEEAVVALMARSELDSDDKPL*
Ga0058701_1051372313300010395AgaveMLAAWGDFIEEDEETEEEDVVVALVARSDSDSDDEPLDRLA*
Ga0058701_1051553813300010395AgaveMLAAWGDSTKEEEGNKEEEAAVALMARSDLESDEESLDSLDQLKE*
Ga0058701_1052826913300010395AgaveMLAAWRDSIEEEEGTEEEEAVVALMAKSNSDSYDEPLN
Ga0058701_1053429923300010395AgaveMLAALGDTTEEDEALEEEEAAVILMARSESDSNDEPVDSLAQFKEKARRLNKVKL*
Ga0058701_1060011813300010395AgaveMLTAWGDSTKEGVGIEKEDAAISLMARSDSNSDHEPLDSLAQLKDKVRGLNKAK
Ga0058701_1062903923300010395AgaveMLAPWEDSIEEDEGTEEEDVAIALMARSDSDSDDEPLDSLAQLKDKV
Ga0058701_1063561723300010395AgaveMMPVWGDTTEEDETSGEEAAAAVVALMARSETYSDDEPVDSLSQHKEKVRGLKKAKLE*
Ga0058701_1065184623300010395AgaveMLATWGDSTEEDEGTEEEDAAVALMAKSDSDSDDE
Ga0058701_1065370923300010395AgaveMLAAWGDITEDDEASEEEEAAIVLMAKSESDSDDEAVDNLSQLKVKVRGLNKV
Ga0058701_1070381313300010395AgaveMLAAWGDSTEKDEGTEEEDAAVTLMARSDSDSDDEPFDS*
Ga0058701_1076226313300010395AgaveMLAAWGDSTVEDEGTKEEDAAVALMARSDSDSDDEPLDSLAQLKDK
Ga0058701_1083358623300010395AgaveMLTAWEDSTEEDEGTDEEDAVVALMARSDSDSNDEPLIA*
Ga0058701_1084070323300010395AgaveMFAAWGDSTKDDEASEEKEVVVALMARRKSDSNDEPIESLAPTQRKGTRS*
Ga0209796_1025074323300027766AgaveVAWGDSGEENEGTEEEDAAVALMTRSDSDSDDEPL
Ga0209796_1025252513300027766AgaveMLAAWGDTTEDDEASEEEETVVALMARSELDSDDEPLDSLAQLKEKVRGL
Ga0209796_1028517313300027766AgaveMLAAWGDSTEDDEAAEEEAVVVALMARSESNSDDEPLESLARLKEKV
Ga0268246_1003500923300030495AgaveMLAAWGDTIEDDEVSEEEEEVVLALMVRSESDSDDELVDSPSQLKVKVRGLNKPKLKCFS
Ga0268246_1006072013300030495AgaveMLAAWEDSTEEDEGTKEEDAAVALMARSDFDSDDEPLDSLAQLKDNVCGLN
Ga0268246_1008109713300030495AgaveMLAAWGDSTKEEEGNKEEEAAVALMARSDLESDEESLDSLDQLKE
Ga0268246_1008870223300030495AgaveMLAAWRDTTEDDEASKEEAVVALMAKSESDSNDEPLDTLA
Ga0268246_1012413223300030495AgaveMLAAWRDSTEEDEVTEEENAAIALMARSDSDSDDKPLDNLAQLKA
Ga0268246_1013696823300030495AgaveMLTASRDSTEEDEGTEEEDAAVALMARSDSDSDDEPLDSLA
Ga0268246_1014625023300030495AgaveMLAAWGDSTKEDEGTKEEDAAVALMAWSESDSKDEPLKSLTQLKEKVSGLS
Ga0268246_1016975413300030495AgaveMHAAWANSPEGDEGTEEEDATLALMARSDSDSDDEPLDSLAQLKEKIC
Ga0268246_1017840613300030495AgaveMLTAWGDTIEDDEAFEEEEGAIALIARSESDSDDEPLDSLA
Ga0268246_1021881413300030495AgaveMLAAWGDSIEDDEASEEEEVVVALTARSESNSDDEPLESLAQLKEKVHVFN
Ga0268246_1025915823300030495AgaveMLAAWGDSTEEDEGTEEEDAVVALMARSDSNSDDEPLDSLAQLKDKVRGLS
Ga0268246_1027202623300030495AgaveMLAAWGDSIEEEEATEEEEAAVALMARSDSDLDDESLD
Ga0268247_1008279613300030498AgaveFARRCSKAMLVASGDSTEDDERTKEEDAVVALMARSDSNSDDEPLDSLV
Ga0268247_1018066813300030498AgaveMHAAWGDSTEEDEETKEEDAAVALMAGRDSDSDDERLDSLA
Ga0268247_1020277033300030498AgaveMMAAWGYTTEEDEALEEEAAVALMARSESDSDDELVDSLAQLKEKVCGLN
Ga0268247_1025150713300030498AgaveMLAAWRDSTEKDEGTEEEDATVALMARSDSDSDDEPLDSLAQLKD
Ga0268247_1026577333300030498AgaveMLAAWVDSTEEEEGPKEEEAAVALMVRSKLDSDDVSIESLD
Ga0268247_1029136813300030498AgaveMLTAWGDTTKDDEASEEKEVVIALMVKSESDLDDEPLHSLS
Ga0268247_1029498823300030498AgaveMITAWGDSTEEHEGTEEEDAAIALMARSDSDSDNE
Ga0268247_1031440923300030498AgaveMLAAWGDSTEEDEGTKEEDAAVALLAWSESNSEDEPL
Ga0268247_1032779923300030498AgaveMLAAWGDSTEEDEETEEEDVVIALMARSDSNSDDEPLDSLAQLKNKVRGSIK
Ga0268247_1042593723300030498AgaveMLAAWRDSTEEDKGTEEEDAAIALMARSDSDSDEEPFDNLAQLKDKVRGLNK
Ga0268247_1044870513300030498AgaveMLAAWGDFIEEDEETEEEDVVVALVARSDSDSDDEPLDRLA
Ga0268247_1048799223300030498AgaveMLVAWCDTIEDDEASDEEEVAIAFMARSESDSDDESLESLAQLKEK
Ga0268247_1049188013300030498AgaveMLAAWGDSTKEEEGTGEKEVAVALMARSDSESDNEPLDNLAQLRTRYVV
Ga0268247_1051414413300030498AgaveMKEDEASEEEEAVVALTARSELELDIEPVESLSQLKEKVHGLSKAKLEE
Ga0268247_1052820523300030498AgaveMLAAWGDSTEEDEGTEEEDVAVALMSKRDFDSDDEPLDSLAQLKGKVR
Ga0268247_1052854713300030498AgaveMLSTWGDSIEEDEGTEEEDTSVALRARSDSDSDDEPLNSLV
Ga0268247_1053035313300030498AgaveMLAAWGDTTEDDEASEEEEVAVALMARSESDSDDEPL
Ga0268247_1056533723300030498AgaveMLTAXGDSTEEDEGTEEEDEAIALMAKSDFNSDDEP
Ga0268247_1057417023300030498AgaveMLATWGDSTKEEEGTEEEEAAIALMARSDSDSNDEPLDSLAQ
Ga0268247_1057498313300030498AgaveMLAAWGDFTKEDEGTEEEDAIGALMAISDSDSDDEPLDGLA
Ga0268244_1015499933300030501AgaveMLAAWGDSTEDEEGTEEEDAVVALMARSDSDSDDEPLDSLAQLKDKVRGLN
Ga0268244_1019098423300030501AgaveMLAAWGDSTEDDEGTEEEDAVVALMARSDSDSDDEHLDSLAQLKDKVYVV
Ga0268254_1026759513300030515AgaveMLAAWSNTTEDDEASEEEEAAVALMARSESDSYDEPLESLAQLKEKVSGF


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