Scaffold Ga0105239_10443901

Overview

Basic Information

• Taxon OID: 3300010375
• Scaffold ID: Ga0105239_10443901
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F066970	Metagenome / Metatranscriptome	126	Y
F100779	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105239_104439011	F066970	GGCGG	LYIKHLTSLQFLTYVGFFAVVLAAMFKFVPGKAPPVRTEPYPEDELGAHD
Ga0105239_104439014	F000805	AGGAGG	MGMPSGDSPAKAHQYYEYLQSHDQTMQVPATWHVHWLDLAWLWGFVIALSVVTLLWVWQYRSTRQKAGIYPVDQFGGYTTELAGPATFFFLFLVVLLTGFAVVLIAGHIIWGQKF*
Ga0105239_104439016	F100779	N/A	ANGIKALYDDMLNRAWSDSKARGEKLPPESQKAIPPTVPGQQ*