Scaffold Ga0126379_10111672

Overview

Basic Information

• Taxon OID: 3300010366
• Scaffold ID: Ga0126379_10111672
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126379_101116726	F059390	GGA	MHVATVGSLAVTVGWLIALIVLILAVLGLVGVLPSTPLVIFGLIGGLAIARLL*
Ga0126379_101116727	F045919	GGA	VVTDDIYGSRETTVYEIGYPDNINPQVGLTNADGSALQAVLESYGRESSQSWLDFDTVYELAQSTTGMLSGAAWYHWVGLRGVQSSNLWVANSAPGYKGVYDVLSRDDFNRLGGFSVVWLV*
Ga0126379_101116728	F077695	GGA	MTDYSIGPGVQQAMADNGDEPRSDERYIILDEGHRVSLTFGRDGQYFWYEEDNRVNRVPFR*