Scaffold Ga0126377_10172593

Overview

Basic Information

• Taxon OID: 3300010362
• Scaffold ID: Ga0126377_10172593
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2050
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046248	Metagenome	151	Y
F055839	Metagenome / Metatranscriptome	138	Y
F066401	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_101725931	F066401	N/A	VKETARAMVEERTREDFDQFRKAKQRDRDTIEAVKILFYNKAYIYYACIVSLGREKFSDKAVAECAQEPMKELMAGLNRAKEDARNPKAAACEAKARLVKEEKEFPPYDFLAGEDIHLFDFRAMRTCLTAR*
Ga0126377_101725932	F055839	AGG	MRQIRVLDSMKYLAAALALMAGSTLATAADINFGEVRTRYQVENELTAAERLRPWDVDWRHTHLWQQGRAFGPDFAPRGCYITRLVTTRSGSRWEQLYIC*
Ga0126377_101725934	F046248	N/A	MRKKRAMRRALPVLVAAVLLTAIFVDVVVAGVKAVSRPGRASYPAPDAAITVTVPDSMKAFPRELLPQ*