Scaffold Ga0126377_10009901

Overview

Basic Information

• Taxon OID: 3300010362
• Scaffold ID: Ga0126377_10009901
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7380
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002340	Metagenome / Metatranscriptome	569	Y
F020819	Metagenome / Metatranscriptome	222	Y
F047344	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_100099013	F020819	AGGAG	VAKAPKAANTKARQLIDGASFGPDALKAIGEAFDTAWAAISANFGNDPVDADKARLRLAEALLSIADEDSRDVEVLKRAALQRMALDYKRRS*
Ga0126377_100099018	F047344	N/A	MAGSTMRTVNETKQPEADLWTWIVIGLVFSAVTAALYAPFVWEHWA*
Ga0126377_100099019	F002340	AGGAG	MKTMLCALVALSVIAGVTGTASAFDAKDFYERVDRNHN*