Scaffold Ga0126377_10002153

Overview

Basic Information

• Taxon OID: 3300010362
• Scaffold ID: Ga0126377_10002153
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13431
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003059	Metagenome / Metatranscriptome	510	Y
F010961	Metagenome / Metatranscriptome	297	Y
F041300	Metagenome / Metatranscriptome	160	Y
F047102	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126377_1000215316	F010961	GGAGG	MQRVTAMMAYVVSDGRLCALKPAEWSLLLLGITLCGVATLLFLALHA*
Ga0126377_1000215320	F003059	AGGGGG	MKRGGIAAGLLAGAVIATTAMPGSAQVRDAVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVPEQGKGSVTGQDIELQGSWKSGNRQYEAKYGGAFVRRHADLKGTQTWTDGGKTFSRSCTGTIKRPFRVFLPGEKK*
Ga0126377_100021533	F041300	GGA	MDPGRLLPLGAGEVSLAFFSAVDYRRYAAECVRLAQQVADPDDKARLLDMAETFRELADKNGSRHARLPEG*
Ga0126377_100021534	F047102	N/A	MDTVTVSIAIPESRRCRQRARQCRSVAGHLRVQNAREQMLKAAAEYERMARDAEQREIAQGVSLLTALIVRQRPGQRAA*