Scaffold Ga0129333

Basic Information
Taxon OID	3300010354 Open in IMG/M
Scaffold ID	Ga0129333_10002313 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010354 Open in IMG/M

Scaffold ID

Ga0129333_10002313 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17699
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (45.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17699

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (45.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	39.2637	Long. (^o)	-76.0017	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

39.2637

Long. (^o)

-76.0017

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014004	Metagenome / Metatranscriptome	266	Y
F021974	Metagenome / Metatranscriptome	216	Y
F029725	Metagenome / Metatranscriptome	187	Y
F055691	Metagenome / Metatranscriptome	138	Y
F085647	Metagenome / Metatranscriptome	111	Y
F087139	Metagenome / Metatranscriptome	110	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129333_100023131	F087139	N/A	MLLSKASFNDQKVLPFIVKKESEYTEEGSYSLHLFSRTVITKEGKKYRYLPLKFEGELARFRKRKDAEDYARYRLALD*
Ga0129333_1000231310	F014004	N/A	MSKVLTLQVTEVSFDFDDLDFTLEEQQSVINSVVGNVFEVEVDDDDDDEAIADVLVEEVTDYAGWCVCSLDFIHVLK*
Ga0129333_1000231316	F029725	N/A	MNKLTELEFFLNEKCREDPDLLATIISEYVWGLNPTKLAELEDFLANNFGDD*
Ga0129333_1000231318	F021974	N/A	MSNTIVSEIYSYHTNWKEGKVNQMWIEQLTDKECDNLYVAVAYNPSNGSKMEMSNPRTSYHETLNWVRNWCGTFCILPA*
Ga0129333_1000231328	F085647	N/A	MLWQDRNGNWFSTKSILDMKIEKAMIEANANKVWEEKERSGDWLFDEMFGG*
Ga0129333_1000231340	F090331	N/A	MSIGLGVAIYAALVAFVSSTMIYYFKVMYPAEEAQLKEKSK*
Ga0129333_100023137	F055691	N/A	MSTYTSPLTSKVYEIVETSHTRNAWDSKGNLTPYVQSVFDIYYNGQKVQFALTAEGVADSVAHLENPGPDVSSRFD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129333_10002313

Overview

Ecosystem & Geography

Associated Families

Sequences