Scaffold Ga0126380_11393568

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_11393568
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028882	Metagenome	190	Y
F079460	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_113935682	F079460	N/A	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLQVRDTKA*
Ga0126380_113935683	F028882	AGGA	MIKDEMIECFNSAPTGSRHERMLWAARKIARLTGATEGGAYKMLLVALIEA