Metagenome Family F079460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079460
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	39 residues
Representative Sequence	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Number of Associated Samples	60
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	11.30 %
% of genes near scaffold ends (potentially truncated)	48.70 %
% of genes from short scaffolds (< 2000 bps)	84.35 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (28.696 % of family members)
Environment Ontology (ENVO)	Unclassified (49.565 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.913 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.78% β-sheet: 0.00% Coil/Unstructured: 16.22%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00816	Histone_HNS	6.09
PF00589	Phage_integrase	2.61
PF13676	TIR_2	2.61
PF04392	ABC_sub_bind	1.74
PF07883	Cupin_2	1.74
PF00565	SNase	1.74
PF07885	Ion_trans_2	0.87
PF01068	DNA_ligase_A_M	0.87
PF04014	MazE_antitoxin	0.87
PF07508	Recombinase	0.87
PF13936	HTH_38	0.87
PF13560	HTH_31	0.87
PF14347	DUF4399	0.87
PF00486	Trans_reg_C	0.87
PF07681	DoxX	0.87
PF01569	PAP2	0.87
PF06841	Phage_T4_gp19	0.87
PF07452	CHRD	0.87
PF03401	TctC	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	6.09
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.74
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.87
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.87
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.87
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.87
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.17 %
Unclassified	root	N/A	47.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.17 %
Unclassified	root	N/A	47.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.17 %
Unclassified	root	N/A	47.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.04 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.61 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.61 %
Aurantimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas	0.87 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.87 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.61 %
unclassified Aurantimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas	0.87 %
unclassified Rhodomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium	0.87 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.61 %
Rhodomicrobium sp. Az07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07	0.87 %
Aurantimonas sp. 22II-16-19i	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas → Aurantimonas sp. 22II-16-19i	0.87 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1019832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1069	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10013866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2214	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10132975	Not Available	604	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1018843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	1307	Open in IMG/M
3300005332\|Ga0066388_102884956	Not Available	878	Open in IMG/M
3300005764\|Ga0066903_100291061	Not Available	2572	Open in IMG/M
3300005764\|Ga0066903_100300584	All Organisms → cellular organisms → Bacteria	2539	Open in IMG/M
3300005764\|Ga0066903_101478419	Not Available	1281	Open in IMG/M
3300005764\|Ga0066903_101878693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1146	Open in IMG/M
3300005764\|Ga0066903_102687260	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300005764\|Ga0066903_102733066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	957	Open in IMG/M
3300005764\|Ga0066903_103607110	Not Available	833	Open in IMG/M
3300005764\|Ga0066903_104009003	Not Available	789	Open in IMG/M
3300005764\|Ga0066903_105552222	Not Available	664	Open in IMG/M
3300005764\|Ga0066903_105950234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300005764\|Ga0066903_106395082	Not Available	614	Open in IMG/M
3300005764\|Ga0066903_108803276	Not Available	512	Open in IMG/M
3300006028\|Ga0070717_10225402	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300009792\|Ga0126374_10650252	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300009792\|Ga0126374_11151627	Not Available	618	Open in IMG/M
3300010043\|Ga0126380_11393568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300010046\|Ga0126384_10569027	Not Available	987	Open in IMG/M
3300010046\|Ga0126384_11608627	Not Available	612	Open in IMG/M
3300010047\|Ga0126382_11922366	Not Available	560	Open in IMG/M
3300010048\|Ga0126373_11014155	Not Available	895	Open in IMG/M
3300010048\|Ga0126373_12082038	Not Available	629	Open in IMG/M
3300010048\|Ga0126373_12303743	Not Available	599	Open in IMG/M
3300010358\|Ga0126370_10124675	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
3300010358\|Ga0126370_12510908	Not Available	514	Open in IMG/M
3300010359\|Ga0126376_10126527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2004	Open in IMG/M
3300010361\|Ga0126378_10307256	Not Available	1690	Open in IMG/M
3300010361\|Ga0126378_10738254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300010361\|Ga0126378_13054373	Not Available	533	Open in IMG/M
3300010366\|Ga0126379_11091628	Not Available	904	Open in IMG/M
3300010366\|Ga0126379_11942482	Not Available	691	Open in IMG/M
3300010366\|Ga0126379_12114305	Not Available	665	Open in IMG/M
3300010376\|Ga0126381_100252725	All Organisms → cellular organisms → Bacteria → Proteobacteria	2389	Open in IMG/M
3300010376\|Ga0126381_100354278	Not Available	2030	Open in IMG/M
3300010376\|Ga0126381_100513478	Not Available	1692	Open in IMG/M
3300010376\|Ga0126381_101286416	Not Available	1057	Open in IMG/M
3300010376\|Ga0126381_103951533	Not Available	577	Open in IMG/M
3300010398\|Ga0126383_10358353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1482	Open in IMG/M
3300010398\|Ga0126383_10504787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1268	Open in IMG/M
3300010863\|Ga0124850_1036918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1557	Open in IMG/M
3300010863\|Ga0124850_1109290	Not Available	750	Open in IMG/M
3300010868\|Ga0124844_1244338	Not Available	634	Open in IMG/M
3300011120\|Ga0150983_15045230	Not Available	969	Open in IMG/M
3300012211\|Ga0137377_11082868	Not Available	732	Open in IMG/M
3300012957\|Ga0164303_10407960	Not Available	841	Open in IMG/M
3300012971\|Ga0126369_10416766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas → Aurantimonas sp. 22II-16-19i	1385	Open in IMG/M
3300012971\|Ga0126369_11165016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07	860	Open in IMG/M
3300012971\|Ga0126369_11193556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	851	Open in IMG/M
3300012971\|Ga0126369_13413507	Not Available	520	Open in IMG/M
3300016294\|Ga0182041_10052511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2768	Open in IMG/M
3300016294\|Ga0182041_10151974	Not Available	1788	Open in IMG/M
3300016319\|Ga0182033_10091076	All Organisms → cellular organisms → Bacteria	2215	Open in IMG/M
3300016357\|Ga0182032_10813889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300016357\|Ga0182032_10994606	Not Available	716	Open in IMG/M
3300016371\|Ga0182034_10088089	All Organisms → cellular organisms → Bacteria → Proteobacteria	2185	Open in IMG/M
3300016371\|Ga0182034_10216752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1490	Open in IMG/M
3300016371\|Ga0182034_10290355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1307	Open in IMG/M
3300016371\|Ga0182034_11373815	Not Available	617	Open in IMG/M
3300016371\|Ga0182034_11674929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300016404\|Ga0182037_10159812	All Organisms → cellular organisms → Bacteria → Proteobacteria	1708	Open in IMG/M
3300016404\|Ga0182037_10223514	Not Available	1475	Open in IMG/M
3300016404\|Ga0182037_11517586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	594	Open in IMG/M
3300016445\|Ga0182038_10176235	Not Available	1660	Open in IMG/M
3300021560\|Ga0126371_10175393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2223	Open in IMG/M
3300021560\|Ga0126371_10295032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1747	Open in IMG/M
3300021560\|Ga0126371_11533496	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300021560\|Ga0126371_13641011	Not Available	520	Open in IMG/M
3300025928\|Ga0207700_11477259	Not Available	603	Open in IMG/M
3300031543\|Ga0318516_10225992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1082	Open in IMG/M
3300031545\|Ga0318541_10297381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	899	Open in IMG/M
3300031564\|Ga0318573_10259614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300031572\|Ga0318515_10206698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1053	Open in IMG/M
3300031573\|Ga0310915_10031533	All Organisms → cellular organisms → Bacteria	3316	Open in IMG/M
3300031573\|Ga0310915_10054280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2597	Open in IMG/M
3300031573\|Ga0310915_10136739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1686	Open in IMG/M
3300031573\|Ga0310915_10186107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1448	Open in IMG/M
3300031573\|Ga0310915_11076993	Not Available	559	Open in IMG/M
3300031719\|Ga0306917_10308079	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300031719\|Ga0306917_10391898	Not Available	1083	Open in IMG/M
3300031724\|Ga0318500_10530619	Not Available	593	Open in IMG/M
3300031736\|Ga0318501_10838006	Not Available	510	Open in IMG/M
3300031744\|Ga0306918_10401095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1068	Open in IMG/M
3300031744\|Ga0306918_10587326	Not Available	873	Open in IMG/M
3300031744\|Ga0306918_11403205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	535	Open in IMG/M
3300031765\|Ga0318554_10571257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	638	Open in IMG/M
3300031771\|Ga0318546_10049379	All Organisms → cellular organisms → Bacteria	2612	Open in IMG/M
3300031781\|Ga0318547_10655063	Not Available	652	Open in IMG/M
3300031796\|Ga0318576_10086502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1415	Open in IMG/M
3300031846\|Ga0318512_10517740	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031879\|Ga0306919_10043260	Not Available	2933	Open in IMG/M
3300031879\|Ga0306919_10418142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1029	Open in IMG/M
3300031890\|Ga0306925_10027545	All Organisms → cellular organisms → Bacteria → Proteobacteria	5753	Open in IMG/M
3300031890\|Ga0306925_12020195	Not Available	543	Open in IMG/M
3300031910\|Ga0306923_11597448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300031912\|Ga0306921_10769854	Not Available	1101	Open in IMG/M
3300031942\|Ga0310916_10466976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1075	Open in IMG/M
3300031945\|Ga0310913_10354501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1038	Open in IMG/M
3300031945\|Ga0310913_11292824	Not Available	506	Open in IMG/M
3300031946\|Ga0310910_10910737	Not Available	689	Open in IMG/M
3300032001\|Ga0306922_10385198	Not Available	1502	Open in IMG/M
3300032025\|Ga0318507_10079559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1342	Open in IMG/M
3300032039\|Ga0318559_10302950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	742	Open in IMG/M
3300032051\|Ga0318532_10047460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1469	Open in IMG/M
3300032052\|Ga0318506_10491721	Not Available	544	Open in IMG/M
3300032094\|Ga0318540_10558132	Not Available	552	Open in IMG/M
3300032261\|Ga0306920_100014448	All Organisms → cellular organisms → Bacteria	10780	Open in IMG/M
3300032261\|Ga0306920_100181503	All Organisms → cellular organisms → Bacteria	3139	Open in IMG/M
3300032261\|Ga0306920_102622895	Not Available	690	Open in IMG/M
3300032261\|Ga0306920_103134739	Not Available	620	Open in IMG/M
3300033289\|Ga0310914_10144831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2091	Open in IMG/M
3300033289\|Ga0310914_10344853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.48%
Loam	Environmental → Terrestrial → Soil → Loam	16.52%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.74%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	28.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10198321	3300000580	Forest Soil	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDVITLPVG*
AF_2010_repII_A1DRAFT_100138663	3300000597	Forest Soil	MSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
AF_2010_repII_A1DRAFT_101329753	3300000597	Forest Soil	MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAYAACWLA
AF_2010_repII_A100DRAFT_10188432	3300000655	Forest Soil	MSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0066388_1028849563	3300005332	Tropical Forest Soil	MLERQRIRTGPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPA
Ga0066903_1002910614	3300005764	Tropical Forest Soil	MSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_1003005844	3300005764	Tropical Forest Soil	MSLRQFIPTVIVGLLLSALLLWLTLGWLLDAITLPVG*
Ga0066903_1014784193	3300005764	Tropical Forest Soil	MSPRQFILAVTAGLLLSALLLWLTLAWLLNAITLPVG*
Ga0066903_1018786933	3300005764	Tropical Forest Soil	MSPKLFIPGVIVGLLLAALLLWLMLGFLLDEITLPVG*
Ga0066903_1026872602	3300005764	Tropical Forest Soil	MSLKQFIPAVIVGLLLSALLLWLTLGWLLDAVTLPVG*
Ga0066903_1027330663	3300005764	Tropical Forest Soil	LCSLVMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_1036071103	3300005764	Tropical Forest Soil	MSPRQFFIPAVIVGLLLAALLMWLTLAPLLDAITLPVG*
Ga0066903_1040090031	3300005764	Tropical Forest Soil	VLGVFLRLSLRQFIPAVIVGLLLAALLLWLTLGWLLDAI
Ga0066903_1055522222	3300005764	Tropical Forest Soil	MSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0066903_1059502341	3300005764	Tropical Forest Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_1063950822	3300005764	Tropical Forest Soil	VQQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG*
Ga0066903_1088032761	3300005764	Tropical Forest Soil	VNRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG*
Ga0070717_102254022	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSLRQFIPAVIVGLLLAALLLWFTLGWLLDAITLPVG*
Ga0126374_106502522	3300009792	Tropical Forest Soil	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126374_111516272	3300009792	Tropical Forest Soil	MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITLPVG*
Ga0126380_113935682	3300010043	Tropical Forest Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLQVRDTKA*
Ga0126384_105690271	3300010046	Tropical Forest Soil	MSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126384_116086272	3300010046	Tropical Forest Soil	MSLRQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0126382_119223661	3300010047	Tropical Forest Soil	HRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126373_110141552	3300010048	Tropical Forest Soil	MSPKRFIPGVIAGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126373_120820381	3300010048	Tropical Forest Soil	GDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126373_123037432	3300010048	Tropical Forest Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG*
Ga0126370_101246754	3300010358	Tropical Forest Soil	MSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126370_125109082	3300010358	Tropical Forest Soil	MSLRQFILAVIVGLLLAALLLWLTLARLLDAITLPVG*
Ga0126376_101265271	3300010359	Tropical Forest Soil	VSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0126378_103072561	3300010361	Tropical Forest Soil	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV
Ga0126378_107382542	3300010361	Tropical Forest Soil	MSLRQFIPAIIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126378_130543732	3300010361	Tropical Forest Soil	RMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126379_110916283	3300010366	Tropical Forest Soil	MSLRQFIPAVIVGLLLATLLLWLTLGWLLDAITLPVG*
Ga0126379_119424823	3300010366	Tropical Forest Soil	MSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG*
Ga0126379_121143051	3300010366	Tropical Forest Soil	MSLWQFIPAVIAGLLLAALLLWFTLGWLLTTITLPVG*
Ga0126381_1002527251	3300010376	Tropical Forest Soil	MSLKQFIPAVIVGLLLAALLLWLTLGWLLNAITLPVG*
Ga0126381_1003542781	3300010376	Tropical Forest Soil	HHASHHMSLRQFIPAVIVGLLLAALLLWLALGWLLDAITLPVG*
Ga0126381_1005134784	3300010376	Tropical Forest Soil	MSLKRFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126381_1012864161	3300010376	Tropical Forest Soil	RMSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG*
Ga0126381_1039515332	3300010376	Tropical Forest Soil	MSLRQFIPAVIVGLLLTALLLWLTLGWLLDAITLPVG*
Ga0126383_103583532	3300010398	Tropical Forest Soil	MSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126383_105047873	3300010398	Tropical Forest Soil	MNLRSFIPAVIVGLLLAALLLWLTLGWLLDAITLSAG*
Ga0124850_10369181	3300010863	Tropical Forest Soil	KQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0124850_11092901	3300010863	Tropical Forest Soil	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG*
Ga0124844_12443381	3300010868	Tropical Forest Soil	MSLRQFILAVTAGLLLSALLLWLTLARLLDAITLPAG*
Ga0150983_150452302	3300011120	Forest Soil	MSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0137377_110828682	3300012211	Vadose Zone Soil	MSLKHFIPAVIVGLLVAALLLWLTLGWLLNAITLPVG*
Ga0164303_104079601	3300012957	Soil	MSLRQFIPAIIVGLLLASLLLWLTLAWLLDAITIPVG*
Ga0126369_104167664	3300012971	Tropical Forest Soil	LIREQFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126369_111650161	3300012971	Tropical Forest Soil	MSLRQFIPVVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0126369_111935562	3300012971	Tropical Forest Soil	MSLRHFIPAVIAGLLLAAVPLWLTLDWLLNAITMPVG*
Ga0126369_134135072	3300012971	Tropical Forest Soil	MSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITL
Ga0182041_100525114	3300016294	Soil	LRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0182041_101519745	3300016294	Soil	MTAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0182033_100910761	3300016319	Soil	ESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0182032_108138891	3300016357	Soil	RHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0182032_109946062	3300016357	Soil	ESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0182034_100880893	3300016371	Soil	VRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0182034_102167522	3300016371	Soil	HESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0182034_102903551	3300016371	Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPV
Ga0182034_113738151	3300016371	Soil	CMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0182034_116749291	3300016371	Soil	MGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV
Ga0182037_101598123	3300016404	Soil	LRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0182037_102235141	3300016404	Soil	VIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0182037_115175862	3300016404	Soil	MNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0182038_101762355	3300016445	Soil	HRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0126371_101753935	3300021560	Tropical Forest Soil	VSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0126371_102950321	3300021560	Tropical Forest Soil	MSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0126371_115334963	3300021560	Tropical Forest Soil	MSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG
Ga0126371_136410111	3300021560	Tropical Forest Soil	MSLRQFIPVVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0207700_114772592	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0318516_102259922	3300031543	Soil	MSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318541_102973811	3300031545	Soil	MSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318573_102596141	3300031564	Soil	MGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318515_102066981	3300031572	Soil	HRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310915_100315331	3300031573	Soil	RFGCGVRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0310915_100542803	3300031573	Soil	MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0310915_101367392	3300031573	Soil	MSLKQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0310915_101861073	3300031573	Soil	NSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG
Ga0310915_110769932	3300031573	Soil	SLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0306917_103080792	3300031719	Soil	MSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0306917_103918983	3300031719	Soil	CMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318500_105306191	3300031724	Soil	LPQDVGDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318501_108380061	3300031736	Soil	SARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0306918_104010951	3300031744	Soil	DVDLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306918_105873262	3300031744	Soil	MSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG
Ga0306918_114032051	3300031744	Soil	ARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318554_105712571	3300031765	Soil	LRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318546_100493791	3300031771	Soil	RMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318547_106550632	3300031781	Soil	MSLRQFILAVTAGLLLSALLLWLTLAWLLDAITLPVG
Ga0318576_100865024	3300031796	Soil	YRHRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318512_105177402	3300031846	Soil	LTCVRSFTSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPV
Ga0306919_100432602	3300031879	Soil	MSLRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306919_104181421	3300031879	Soil	DLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306925_100275456	3300031890	Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0306925_120201951	3300031890	Soil	LKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306923_115974481	3300031910	Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG
Ga0306921_107698541	3300031912	Soil	MSLKQFIPAVIVGLLVAALLLSLTLGWLLDAITLPVG
Ga0310916_104669761	3300031942	Soil	VFAMNSHRMSLRQFIPAAIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310913_103545011	3300031945	Soil	MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVC
Ga0310913_112928241	3300031945	Soil	HRVRHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0310910_109107371	3300031946	Soil	RSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0306922_103851981	3300032001	Soil	AHRMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318507_100795592	3300032025	Soil	SHRARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318559_103029501	3300032039	Soil	TSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPVG
Ga0318532_100474601	3300032051	Soil	ARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318506_104917211	3300032052	Soil	MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPTSI
Ga0318540_105581321	3300032094	Soil	MSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLP
Ga0306920_10001444811	3300032261	Soil	MSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0306920_1001815031	3300032261	Soil	HRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0306920_1026228951	3300032261	Soil	MSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0306920_1031347392	3300032261	Soil	MSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLP
Ga0310914_101448311	3300033289	Soil	ISLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310914_103448532	3300033289	Soil	MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLSVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079460

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences