NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079460

Metagenome Family F079460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079460
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 39 residues
Representative Sequence MSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Number of Associated Samples 60
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 11.30 %
% of genes near scaffold ends (potentially truncated) 48.70 %
% of genes from short scaffolds (< 2000 bps) 84.35 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (52.174 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(28.696 % of family members)
Environment Ontology (ENVO) Unclassified
(49.565 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(73.913 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 83.78%    β-sheet: 0.00%    Coil/Unstructured: 16.22%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF00816Histone_HNS 6.09
PF00589Phage_integrase 2.61
PF13676TIR_2 2.61
PF04392ABC_sub_bind 1.74
PF07883Cupin_2 1.74
PF00565SNase 1.74
PF07885Ion_trans_2 0.87
PF01068DNA_ligase_A_M 0.87
PF04014MazE_antitoxin 0.87
PF07508Recombinase 0.87
PF13936HTH_38 0.87
PF13560HTH_31 0.87
PF14347DUF4399 0.87
PF00486Trans_reg_C 0.87
PF07681DoxX 0.87
PF01569PAP2 0.87
PF06841Phage_T4_gp19 0.87
PF07452CHRD 0.87
PF03401TctC 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG2916DNA-binding protein H-NSTranscription [K] 6.09
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.74
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.87
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.87
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.87
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.87
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 0.87
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms52.17 %
UnclassifiedrootN/A47.83 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000580|AF_2010_repII_A01DRAFT_1019832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1069Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10013866All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2214Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10132975Not Available604Open in IMG/M
3300000655|AF_2010_repII_A100DRAFT_1018843All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales1307Open in IMG/M
3300005332|Ga0066388_102884956Not Available878Open in IMG/M
3300005764|Ga0066903_100291061Not Available2572Open in IMG/M
3300005764|Ga0066903_100300584All Organisms → cellular organisms → Bacteria2539Open in IMG/M
3300005764|Ga0066903_101478419Not Available1281Open in IMG/M
3300005764|Ga0066903_101878693All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1146Open in IMG/M
3300005764|Ga0066903_102687260All Organisms → cellular organisms → Bacteria965Open in IMG/M
3300005764|Ga0066903_102733066All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium957Open in IMG/M
3300005764|Ga0066903_103607110Not Available833Open in IMG/M
3300005764|Ga0066903_104009003Not Available789Open in IMG/M
3300005764|Ga0066903_105552222Not Available664Open in IMG/M
3300005764|Ga0066903_105950234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium639Open in IMG/M
3300005764|Ga0066903_106395082Not Available614Open in IMG/M
3300005764|Ga0066903_108803276Not Available512Open in IMG/M
3300006028|Ga0070717_10225402All Organisms → cellular organisms → Bacteria1649Open in IMG/M
3300009792|Ga0126374_10650252All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300009792|Ga0126374_11151627Not Available618Open in IMG/M
3300010043|Ga0126380_11393568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium615Open in IMG/M
3300010046|Ga0126384_10569027Not Available987Open in IMG/M
3300010046|Ga0126384_11608627Not Available612Open in IMG/M
3300010047|Ga0126382_11922366Not Available560Open in IMG/M
3300010048|Ga0126373_11014155Not Available895Open in IMG/M
3300010048|Ga0126373_12082038Not Available629Open in IMG/M
3300010048|Ga0126373_12303743Not Available599Open in IMG/M
3300010358|Ga0126370_10124675All Organisms → cellular organisms → Bacteria1833Open in IMG/M
3300010358|Ga0126370_12510908Not Available514Open in IMG/M
3300010359|Ga0126376_10126527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2004Open in IMG/M
3300010361|Ga0126378_10307256Not Available1690Open in IMG/M
3300010361|Ga0126378_10738254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1095Open in IMG/M
3300010361|Ga0126378_13054373Not Available533Open in IMG/M
3300010366|Ga0126379_11091628Not Available904Open in IMG/M
3300010366|Ga0126379_11942482Not Available691Open in IMG/M
3300010366|Ga0126379_12114305Not Available665Open in IMG/M
3300010376|Ga0126381_100252725All Organisms → cellular organisms → Bacteria → Proteobacteria2389Open in IMG/M
3300010376|Ga0126381_100354278Not Available2030Open in IMG/M
3300010376|Ga0126381_100513478Not Available1692Open in IMG/M
3300010376|Ga0126381_101286416Not Available1057Open in IMG/M
3300010376|Ga0126381_103951533Not Available577Open in IMG/M
3300010398|Ga0126383_10358353All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1482Open in IMG/M
3300010398|Ga0126383_10504787All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1268Open in IMG/M
3300010863|Ga0124850_1036918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1557Open in IMG/M
3300010863|Ga0124850_1109290Not Available750Open in IMG/M
3300010868|Ga0124844_1244338Not Available634Open in IMG/M
3300011120|Ga0150983_15045230Not Available969Open in IMG/M
3300012211|Ga0137377_11082868Not Available732Open in IMG/M
3300012957|Ga0164303_10407960Not Available841Open in IMG/M
3300012971|Ga0126369_10416766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas → Aurantimonas sp. 22II-16-19i1385Open in IMG/M
3300012971|Ga0126369_11165016All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07860Open in IMG/M
3300012971|Ga0126369_11193556All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7851Open in IMG/M
3300012971|Ga0126369_13413507Not Available520Open in IMG/M
3300016294|Ga0182041_10052511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2768Open in IMG/M
3300016294|Ga0182041_10151974Not Available1788Open in IMG/M
3300016319|Ga0182033_10091076All Organisms → cellular organisms → Bacteria2215Open in IMG/M
3300016357|Ga0182032_10813889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium790Open in IMG/M
3300016357|Ga0182032_10994606Not Available716Open in IMG/M
3300016371|Ga0182034_10088089All Organisms → cellular organisms → Bacteria → Proteobacteria2185Open in IMG/M
3300016371|Ga0182034_10216752All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1490Open in IMG/M
3300016371|Ga0182034_10290355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1307Open in IMG/M
3300016371|Ga0182034_11373815Not Available617Open in IMG/M
3300016371|Ga0182034_11674929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium559Open in IMG/M
3300016404|Ga0182037_10159812All Organisms → cellular organisms → Bacteria → Proteobacteria1708Open in IMG/M
3300016404|Ga0182037_10223514Not Available1475Open in IMG/M
3300016404|Ga0182037_11517586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium594Open in IMG/M
3300016445|Ga0182038_10176235Not Available1660Open in IMG/M
3300021560|Ga0126371_10175393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2223Open in IMG/M
3300021560|Ga0126371_10295032All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1747Open in IMG/M
3300021560|Ga0126371_11533496All Organisms → cellular organisms → Bacteria → Proteobacteria794Open in IMG/M
3300021560|Ga0126371_13641011Not Available520Open in IMG/M
3300025928|Ga0207700_11477259Not Available603Open in IMG/M
3300031543|Ga0318516_10225992All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1082Open in IMG/M
3300031545|Ga0318541_10297381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae899Open in IMG/M
3300031564|Ga0318573_10259614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium927Open in IMG/M
3300031572|Ga0318515_10206698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1053Open in IMG/M
3300031573|Ga0310915_10031533All Organisms → cellular organisms → Bacteria3316Open in IMG/M
3300031573|Ga0310915_10054280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_72597Open in IMG/M
3300031573|Ga0310915_10136739All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1686Open in IMG/M
3300031573|Ga0310915_10186107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris1448Open in IMG/M
3300031573|Ga0310915_11076993Not Available559Open in IMG/M
3300031719|Ga0306917_10308079All Organisms → cellular organisms → Bacteria1224Open in IMG/M
3300031719|Ga0306917_10391898Not Available1083Open in IMG/M
3300031724|Ga0318500_10530619Not Available593Open in IMG/M
3300031736|Ga0318501_10838006Not Available510Open in IMG/M
3300031744|Ga0306918_10401095All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1068Open in IMG/M
3300031744|Ga0306918_10587326Not Available873Open in IMG/M
3300031744|Ga0306918_11403205All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium535Open in IMG/M
3300031765|Ga0318554_10571257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae638Open in IMG/M
3300031771|Ga0318546_10049379All Organisms → cellular organisms → Bacteria2612Open in IMG/M
3300031781|Ga0318547_10655063Not Available652Open in IMG/M
3300031796|Ga0318576_10086502All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1415Open in IMG/M
3300031846|Ga0318512_10517740All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300031879|Ga0306919_10043260Not Available2933Open in IMG/M
3300031879|Ga0306919_10418142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1029Open in IMG/M
3300031890|Ga0306925_10027545All Organisms → cellular organisms → Bacteria → Proteobacteria5753Open in IMG/M
3300031890|Ga0306925_12020195Not Available543Open in IMG/M
3300031910|Ga0306923_11597448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium678Open in IMG/M
3300031912|Ga0306921_10769854Not Available1101Open in IMG/M
3300031942|Ga0310916_10466976All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1075Open in IMG/M
3300031945|Ga0310913_10354501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_71038Open in IMG/M
3300031945|Ga0310913_11292824Not Available506Open in IMG/M
3300031946|Ga0310910_10910737Not Available689Open in IMG/M
3300032001|Ga0306922_10385198Not Available1502Open in IMG/M
3300032025|Ga0318507_10079559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1342Open in IMG/M
3300032039|Ga0318559_10302950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales742Open in IMG/M
3300032051|Ga0318532_10047460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1469Open in IMG/M
3300032052|Ga0318506_10491721Not Available544Open in IMG/M
3300032094|Ga0318540_10558132Not Available552Open in IMG/M
3300032261|Ga0306920_100014448All Organisms → cellular organisms → Bacteria10780Open in IMG/M
3300032261|Ga0306920_100181503All Organisms → cellular organisms → Bacteria3139Open in IMG/M
3300032261|Ga0306920_102622895Not Available690Open in IMG/M
3300032261|Ga0306920_103134739Not Available620Open in IMG/M
3300033289|Ga0310914_10144831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2091Open in IMG/M
3300033289|Ga0310914_10344853All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1347Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil28.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil26.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil23.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil13.91%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.48%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.87%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.87%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010863Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A01DRAFT_101983213300000580Forest SoilMSLRQFIPAVIVGLLLAALLLWLTLGWLLDVITLPVG*
AF_2010_repII_A1DRAFT_1001386633300000597Forest SoilMSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
AF_2010_repII_A1DRAFT_1013297533300000597Forest SoilMSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAYAACWLA
AF_2010_repII_A100DRAFT_101884323300000655Forest SoilMSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0066388_10288495633300005332Tropical Forest SoilMLERQRIRTGPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPA
Ga0066903_10029106143300005764Tropical Forest SoilMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_10030058443300005764Tropical Forest SoilMSLRQFIPTVIVGLLLSALLLWLTLGWLLDAITLPVG*
Ga0066903_10147841933300005764Tropical Forest SoilMSPRQFILAVTAGLLLSALLLWLTLAWLLNAITLPVG*
Ga0066903_10187869333300005764Tropical Forest SoilMSPKLFIPGVIVGLLLAALLLWLMLGFLLDEITLPVG*
Ga0066903_10268726023300005764Tropical Forest SoilMSLKQFIPAVIVGLLLSALLLWLTLGWLLDAVTLPVG*
Ga0066903_10273306633300005764Tropical Forest SoilLCSLVMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_10360711033300005764Tropical Forest SoilMSPRQFFIPAVIVGLLLAALLMWLTLAPLLDAITLPVG*
Ga0066903_10400900313300005764Tropical Forest SoilVLGVFLRLSLRQFIPAVIVGLLLAALLLWLTLGWLLDAI
Ga0066903_10555222223300005764Tropical Forest SoilMSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0066903_10595023413300005764Tropical Forest SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0066903_10639508223300005764Tropical Forest SoilVQQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG*
Ga0066903_10880327613300005764Tropical Forest SoilVNRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG*
Ga0070717_1022540223300006028Corn, Switchgrass And Miscanthus RhizosphereMSLRQFIPAVIVGLLLAALLLWFTLGWLLDAITLPVG*
Ga0126374_1065025223300009792Tropical Forest SoilMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126374_1115162723300009792Tropical Forest SoilMSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITLPVG*
Ga0126380_1139356823300010043Tropical Forest SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLQVRDTKA*
Ga0126384_1056902713300010046Tropical Forest SoilMSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126384_1160862723300010046Tropical Forest SoilMSLRQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0126382_1192236613300010047Tropical Forest SoilHRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126373_1101415523300010048Tropical Forest SoilMSPKRFIPGVIAGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126373_1208203813300010048Tropical Forest SoilGDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126373_1230374323300010048Tropical Forest SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLNTITLPVG*
Ga0126370_1012467543300010358Tropical Forest SoilMSPKRFIPAVIAGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126370_1251090823300010358Tropical Forest SoilMSLRQFILAVIVGLLLAALLLWLTLARLLDAITLPVG*
Ga0126376_1012652713300010359Tropical Forest SoilVSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0126378_1030725613300010361Tropical Forest SoilMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV
Ga0126378_1073825423300010361Tropical Forest SoilMSLRQFIPAIIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126378_1305437323300010361Tropical Forest SoilRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126379_1109162833300010366Tropical Forest SoilMSLRQFIPAVIVGLLLATLLLWLTLGWLLDAITLPVG*
Ga0126379_1194248233300010366Tropical Forest SoilMSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG*
Ga0126379_1211430513300010366Tropical Forest SoilMSLWQFIPAVIAGLLLAALLLWFTLGWLLTTITLPVG*
Ga0126381_10025272513300010376Tropical Forest SoilMSLKQFIPAVIVGLLLAALLLWLTLGWLLNAITLPVG*
Ga0126381_10035427813300010376Tropical Forest SoilHHASHHMSLRQFIPAVIVGLLLAALLLWLALGWLLDAITLPVG*
Ga0126381_10051347843300010376Tropical Forest SoilMSLKRFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126381_10128641613300010376Tropical Forest SoilRMSPKRFIPAVIAGLLVAALLLWLTLGWLLDAITLPAG*
Ga0126381_10395153323300010376Tropical Forest SoilMSLRQFIPAVIVGLLLTALLLWLTLGWLLDAITLPVG*
Ga0126383_1035835323300010398Tropical Forest SoilMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG*
Ga0126383_1050478733300010398Tropical Forest SoilMNLRSFIPAVIVGLLLAALLLWLTLGWLLDAITLSAG*
Ga0124850_103691813300010863Tropical Forest SoilKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG*
Ga0124850_110929013300010863Tropical Forest SoilMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLRVG*
Ga0124844_124433813300010868Tropical Forest SoilMSLRQFILAVTAGLLLSALLLWLTLARLLDAITLPAG*
Ga0150983_1504523023300011120Forest SoilMSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0137377_1108286823300012211Vadose Zone SoilMSLKHFIPAVIVGLLVAALLLWLTLGWLLNAITLPVG*
Ga0164303_1040796013300012957SoilMSLRQFIPAIIVGLLLASLLLWLTLAWLLDAITIPVG*
Ga0126369_1041676643300012971Tropical Forest SoilLIREQFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG*
Ga0126369_1116501613300012971Tropical Forest SoilMSLRQFIPVVIVGLLLAALLLWLTLAWLLDAITLPVG*
Ga0126369_1119355623300012971Tropical Forest SoilMSLRHFIPAVIAGLLLAAVPLWLTLDWLLNAITMPVG*
Ga0126369_1341350723300012971Tropical Forest SoilMSPRQFFIPAVIVGLLLAALLLSLTLGWLLDAITL
Ga0182041_1005251143300016294SoilLRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0182041_1015197453300016294SoilMTAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0182033_1009107613300016319SoilESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0182032_1081388913300016357SoilRHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0182032_1099460623300016357SoilESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0182034_1008808933300016371SoilVRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0182034_1021675223300016371SoilHESHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0182034_1029035513300016371SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPV
Ga0182034_1137381513300016371SoilCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0182034_1167492913300016371SoilMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPV
Ga0182037_1015981233300016404SoilLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0182037_1022351413300016404SoilVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0182037_1151758623300016404SoilMNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0182038_1017623553300016445SoilHRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0126371_1017539353300021560Tropical Forest SoilVSLRQFILAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0126371_1029503213300021560Tropical Forest SoilMSLRQFLPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0126371_1153349633300021560Tropical Forest SoilMSLKQFIPAVIVGLLVAALLLWFTLGWLLDAITLPVG
Ga0126371_1364101113300021560Tropical Forest SoilMSLRQFIPVVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0207700_1147725923300025928Corn, Switchgrass And Miscanthus RhizosphereMSLRQFIPAIIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0318516_1022599223300031543SoilMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318541_1029738113300031545SoilMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318573_1025961413300031564SoilMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318515_1020669813300031572SoilHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310915_1003153313300031573SoilRFGCGVRSFTNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0310915_1005428033300031573SoilMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0310915_1013673923300031573SoilMSLKQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0310915_1018610733300031573SoilNSHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG
Ga0310915_1107699323300031573SoilSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0306917_1030807923300031719SoilMSLRQFIPAVIVGLLLAALLLWLTLAWLLDAITLPVG
Ga0306917_1039189833300031719SoilCMSLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318500_1053061913300031724SoilLPQDVGDRMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318501_1083800613300031736SoilSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0306918_1040109513300031744SoilDVDLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306918_1058732623300031744SoilMSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLPAG
Ga0306918_1140320513300031744SoilARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318554_1057125713300031765SoilLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318546_1004937913300031771SoilRMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318547_1065506323300031781SoilMSLRQFILAVTAGLLLSALLLWLTLAWLLDAITLPVG
Ga0318576_1008650243300031796SoilYRHRMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318512_1051774023300031846SoilLTCVRSFTSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPV
Ga0306919_1004326023300031879SoilMSLRQFILAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306919_1041814213300031879SoilDLCSLVMSLRHFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306925_1002754563300031890SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0306925_1202019513300031890SoilLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0306923_1159744813300031910SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLSVG
Ga0306921_1076985413300031912SoilMSLKQFIPAVIVGLLVAALLLSLTLGWLLDAITLPVG
Ga0310916_1046697613300031942SoilVFAMNSHRMSLRQFIPAAIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310913_1035450113300031945SoilMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVC
Ga0310913_1129282413300031945SoilHRVRHEHRSARCMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0310910_1091073713300031946SoilRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0306922_1038519813300032001SoilAHRMGLKQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVG
Ga0318507_1007955923300032025SoilSHRARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318559_1030295013300032039SoilTSLRQFIPAVIAGLLLTALLLWLTLGWLLDAITLPVG
Ga0318532_1004746013300032051SoilARHERRSARCMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLPVG
Ga0318506_1049172113300032052SoilMSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPTSI
Ga0318540_1055813213300032094SoilMSPRLFIPAVIVGLLLAALLLWLTLGWLLDAITLP
Ga0306920_100014448113300032261SoilMSLRQFIPAVIAGLLLAALLLWLTLGWLLHAITLPVG
Ga0306920_10018150313300032261SoilHRMSLRQFIPAVIAGLLLAALLLWLTLGWLLDAITMPVG
Ga0306920_10262289513300032261SoilMSLKQFIPAVIVGLLVAVLLLWLTLGWLLDAITLPVG
Ga0306920_10313473923300032261SoilMSLKQFIPAVIVGLLVAALLLWLTLGWLLDAITLP
Ga0310914_1014483113300033289SoilISLRQFIPAVIAGLLLAALLLWLTLGWLLDAITLPVG
Ga0310914_1034485323300033289SoilMSLRQFIPAVIVGLLLAALLLWLTLGWLLDAITLSVG


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