Scaffold Ga0126307_10042618

Overview

Basic Information

• Taxon OID: 3300009789
• Scaffold ID: Ga0126307_10042618
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3528
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8692
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013009	Metagenome / Metatranscriptome	275	Y
F068786	Metagenome / Metatranscriptome	124	Y
F091564	Metagenome	107	Y
F093804	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126307_100426181	F093804	AGGTGG	MANSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126307_100426182	F068786	AGTAG	MSEKKVDLVNSSEVQVMKEKGRDFIDIDVNRLEEQKFYRVEYEGDVYAIEKLSDDKIVFYEVVE*
Ga0126307_100426183	F091564	N/A	MFPIKRVEKIHEELYHYYLQIITFQNGDPQYQDIATKFSKNLSELDSIIEDIRIYNNNSKNNPLIHIFK*
Ga0126307_100426186	F013009	GGA	MCPICKKKFLEHSELQDKICRMITINQFANNSPGFDVQFRPFFED*