Scaffold Ga0115011_10003466

Overview

Basic Information

• Taxon OID: 3300009593
• Scaffold ID: Ga0115011_10003466
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10758
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (42.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y
F103872	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115011_1000346614	F103872	GGAGG	MSTLHHESILETIYDELMDELTLTETLPMYSEKEITSIVYQRFEDLCQ*
Ga0115011_1000346620	F095604	N/A	MTQEADEAARALRKLQELTNKYSNLEMGADELKQSISERINATEELKDILAKATQAKKDRESKLQ*
Ga0115011_1000346621	F084340	GGAG	MTNSNINVTETEHPAQQHQQDVNACIHHIRDAVVDYVESEVLTPGEFVNCVRTALSDSINYHSQRAKLLKDAQDLLTNNITDKEFVQQQL*