NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115561_1016990

Scaffold Ga0115561_1016990


Overview

Basic Information
Taxon OID3300009440 Open in IMG/M
Scaffold IDGa0115561_1016990 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3722
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070114Metagenome / Metatranscriptome123Y
F080236Metagenome / Metatranscriptome115N
F103186Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0115561_10169901F070114N/AMQLHKALENKKLYEIDQSFSEDAWHAFHQADINSQDDFYDFFHEWIDNACIYTSDCESILSGNMEYCFNEHDVYGQPNNVAQAAFACLYDYLMDSPDT
Ga0115561_10169903F080236N/AMNNIYDKKFELYLVTKGYDLDTISLNECLKEIKIWKKNTTNA*
Ga0115561_10169906F103186N/AMNIKINIMRFPKSFTKENKITFYTQRKKEMTKKFVKAMNEEKDLLSTKLNEEIEICEKELNKLL*

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