Scaffold Ga0114982_1000061

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1000061
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54120
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (72.36%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F007263	Metagenome / Metatranscriptome	354	Y
F007921	Metagenome / Metatranscriptome	342	Y
F008814	Metagenome / Metatranscriptome	327	Y
F014140	Metagenome / Metatranscriptome	265	Y
F021988	Metagenome / Metatranscriptome	216	Y
F030095	Metagenome / Metatranscriptome	186	N
F031497	Metagenome / Metatranscriptome	182	Y
F045755	Metagenome / Metatranscriptome	152	N
F051930	Metagenome / Metatranscriptome	143	Y
F066776	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_1000061115	F051930	N/A	MSEEGLVEKLLCPVDQSLLFCNQDLEDNIFLYCLECKYLKNIGAATYENIVKRVNLNDNNKQ*
Ga0114982_1000061119	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNFHEAKLQVRDTQGGKKLAFTLTEQDGIQISPTEGKLKISISADRTNKMFYPKSAYDLVIVDPSVNKTRLLEGYMTLNRSVTV*
Ga0114982_100006122	F014140	N/A	MNKYRIKLDVEVEVEAFNSEDAGEYIHDIFNIDDEIKKVNIVKIQQK*
Ga0114982_100006125	F066776	GGA	MLNLTEQVVEIFIKKFQSSVQKSFWNNYDLVIWKKDHGGYTDTKGMYYNNTWGKAEKISVDKKGIWKLPKKYVRYFK*
Ga0114982_100006134	F008814	N/A	MDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMSANAGETAVWVIQTFMNKFNNAADELKGD*
Ga0114982_100006147	F021988	GAG	MSNSFKKEDGTGMVPPANAGAPAGAVTSTNTPKKYPRQGVKIDTNKHGIRRETSLIPKPTKKPRYKKP*
Ga0114982_10000616	F000369	N/A	MNEIEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEYVDEWKSVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGALAVKSGSLKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEILVGILKEVTASCPKCKMDVAKRLSQITGIVEAVIIEDADVV*
Ga0114982_100006163	F007921	AGGA	MIDWLVNRIFRWDSLRKAVFDEVRMYQSIDRSMWEYEKEGPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLIGLWEDQWLREADAH*
Ga0114982_100006171	F031497	AGGCGG	MSKTQEIKVAESLVNLMDDHWFNPTIFGRYLAEQPIYTIDRIMEMVVSVISEQAKMYDVYSNQGTYTEGLALAKELNECIKAYQQDNNLVNLKLPSRSYKVKREEPVRERIFGWREEEDPFSQ*
Ga0114982_100006173	F000441	AGAAG	MSDNYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQADLS*
Ga0114982_100006179	F000868	GAGG	MSSFLENENEMLIDAIFSEIGEQLVEDWMNSNLDEGQLYADWCVADMSNSNYLKGRFNQFHDLSPTDNYYLQWDENAE*
Ga0114982_100006181	F001125	AGGCGG	MGDRANFGFRDSKENIVFLYGHWAGHRMLENLADAVQIAHPRWNDEAYATRITISQMIGDEWASETGWGISVNELADNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVAKYCTQLSVV*
Ga0114982_100006185	F000980	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVVNATIAPITQTKEEKMEPTTTQIPESYNSNLLVTYKVIRGFSDAEYATDKITSLEWDLHNGRQSQKTVGVLNSKIDSAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWSASIEVSGTYSYNILENDYDLDLESEITDAIFADSHNGNIEINDQEVCNVREN*
Ga0114982_100006197	F045755	AGGGGG	MSQIAGMWICDNCDTLAVVSVLTDTIQITQCKCVTNERETNV*
Ga0114982_100006199	F007263	AGG	MLDTKYIDETEFYFIKDEMKFHCDESQFVYVCKEHGEQMGCYYCEFDYDKKCECE*