Scaffold Ga0114969_10000323

Overview

Basic Information

• Taxon OID: 3300009181
• Scaffold ID: Ga0114969_10000323
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40594
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (76.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F001515	Metagenome / Metatranscriptome	679	Y
F005558	Metagenome	396	Y
F018164	Metagenome / Metatranscriptome	236	Y
F018698	Metagenome / Metatranscriptome	233	Y
F036663	Metagenome / Metatranscriptome	169	N
F055673	Metagenome / Metatranscriptome	138	Y
F060854	Metagenome / Metatranscriptome	132	N
F070030	Metagenome / Metatranscriptome	123	Y
F073288	Metagenome / Metatranscriptome	120	Y
F078625	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_1000032315	F018698	GGAG	MADNYEYEIEDDEDYSGSDLVKKLRKQIDGLQKSLKEKESLIEEFTTYSHESSVGEILESFGLNPRIAQFIPSEVEADADAIAEWLNEYGDAFGIEAVEEGGEASSDAQAYEHMSSLDDGNIDPYVGQDLQSRIGNAGTKEELMKLIQG*
Ga0114969_100003232	F000368	AGGAG	MNAKFQAAALSWFRAAASAAVALYLVGETDLKTLGMAALTGFLGPVLKWLDQSSTDFGRGVE*
Ga0114969_1000032320	F055673	AGGAG	MRVLKKFEENLEYLGFDLAPLAWDIAKMQFPSDDDRLALLEELTVKKEAAPGVNDGMVE*
Ga0114969_1000032324	F078625	AGGAG	MFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK*
Ga0114969_1000032334	F005558	AGGAGG	MTNDSISWGELAELTHQIQVERFQFCMCEDNEGNENPYADCPKGEGNE*
Ga0114969_1000032340	F070030	GAGG	MIHIASVVLICAYCNAEIERRTELEATEALAHHQQYVQCIKNY*
Ga0114969_1000032341	F060854	N/A	MARPRPTEIKLVANLLDPDNTNSESASELALEIIEALDVSRGKRDSYVLVAQLARWAPVQAWGEFNTQLQAEKFVKHLTAVDIEGDGGRALIVHLEQPEKLLERIGESKK*
Ga0114969_1000032350	F073288	N/A	MGIATAMALVSPAQALSPILTQEVRMSVMTKEQKVEYAIAQFVTEKEQRLCAKRIAYKESRYNTDSFNKSSGARGVWQLLWGKPHWSILKQTQEAHKYVLHRYDTWCGAYRFHQERNWY*
Ga0114969_1000032354	F001515	N/A	MAVENLSSFDLDFRFGQEGESLVNQLLTEGGTVEVKRDRKWWSTNNLYIEVECWYRRSQNWEPSGVMVTKAAYWAFVLERGVLMVPTGHVLYAIKKFGREITCEIPPNRSKGYLITVENLLDVMKELKND*
Ga0114969_1000032360	F036663	N/A	VEDNKLIPLVSLGERNELVNQVRLALNVAGDDVLDAPLAELLRGLQHRLSIPAVGCINIATLDALAVAPPEW*
Ga0114969_100003239	F018164	AGG	MVMAKIFRGPTMRIKLGMQNDLWFVSYPWGKTVVKDNGIWKTIVSPQDSSLASYQKVLRGGYDNPITDAEAAELTAAGYGDYVVEV*