Metagenome / Metatranscriptome Family F078625

Basic Information
Family ID	F078625
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	48 residues
Representative Sequence	MFGKQGKAAKANVSTAIMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKLK
Number of Associated Samples	84
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.93 %
% of genes near scaffold ends (potentially truncated)	19.83 %
% of genes from short scaffolds (< 2000 bps)	66.38 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (63.793 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (56.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (63.793 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1FwDRAFT_104338442 2B570J29599_10016402 3B570J40625_1006382982 4JGI25908J49247_100624442 5JGI25922J50271_100001203 6JGI25926J51410_10092021 7JGI25924J51412_10017481 8Ga0007787_104824821 9Ga0066222_13377662 10Ga0007758_107326561 11Ga0007756_114361052 12Ga0068876_101172682 13Ga0068876_102432421 14Ga0078894_100019973 15Ga0078894_105919222 16Ga0075471_100633772 17Ga0075471_103847882 18Ga0102917_12484872 19Ga0102921_13777102 20Ga0102865_10835152 21Ga0105746_12448081 22Ga0105746_13311132 23Ga0105748_101604632 24Ga0105748_105631901 25Ga0108970_101128582 26Ga0114340_10019983 27Ga0114340_10106765 28Ga0114340_10191992 29Ga0114340_10201462 30Ga0114340_10220403 31Ga0114340_11448132 32Ga0114343_11071422 33Ga0114343_11319512 34Ga0114346_10926392 35Ga0114346_11434582 36Ga0114346_12280431 37Ga0114350_10416752 38Ga0114350_10744261 39Ga0114354_10007875 40Ga0114355_11117342 41Ga0114363_10508402 42Ga0114363_11781942 43Ga0104242_10224602 44Ga0104242_10611912 45Ga0114973_101125732 46Ga0114968_101011462 47Ga0114968_101824222 48Ga0114977_1000050231 49Ga0114978_107367962 50Ga0114970_101699072 51Ga0114969_1000032324 52Ga0114974_101233662 53Ga0114974_108084262 54Ga0114972_104556412 55Ga0114982_12472762 56Ga0114967_101570342 57Ga0133913_111134381 58Ga0133913_115055802 59Ga0151516_1012861 60Ga0153801_10723272 61Ga0157627_10633961 62Ga0138292_13159522 63Ga0172373_100046934 64Ga0181364_10626722 65Ga0181343_10202192 66Ga0181346_11807903 67Ga0181359_10000112 68Ga0181359_10322962 69Ga0211732_10009411 70Ga0211726_107183952 71Ga0211735_104355562 72Ga0211729_100634472 73Ga0208050_10206182 74Ga0208235_10364402 75Ga0207939_10020733 76Ga0222712_100245025 77Ga0222712_100604092 78Ga0181353_10079712 79Ga0181354_11577792 80Ga0228701_10008324 81Ga0214917_1000074345 82Ga0214917_100690822 83Ga0214921_102268982 84Ga0244776_101341063 85Ga0208966_10428822 86Ga0209553_10526972 87Ga0209297_10005793 88Ga0209596_100008424 89Ga0209596_100008492 90Ga0209768_103061692 91Ga0307377_105304672 92Ga0315907_100088158 93Ga0315907_102595481 94Ga0315907_104170202 95Ga0315907_106351912 96Ga0315907_106476182 97Ga0315908_100022495 98Ga0315900_101226371 99Ga0315900_111168341 100Ga0315909_100685522 101Ga0315909_106505802 102Ga0315904_106194482 103Ga0315904_108628612 104Ga0315901_105092292 105Ga0315274_108755172 106Ga0315902_103424402 107Ga0334994_0165313_497_646 108Ga0334996_0006518_7154_7306 109Ga0334996_0386790_505_654 110Ga0334986_0302855_378_527 111Ga0335027_0003061_7716_7865 112Ga0335030_0051782_2125_2274 113Ga0335031_0002916_1679_1828 114Ga0335031_0642482_130_279 115Ga0335058_0675127_429_572 116Ga0335007_0279251_707_856
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1FwDRAFT_104338442 2B570J29599_10016402 3JGI25926J51410_10092021 4Ga0066222_13377662 5Ga0078894_100019973 6Ga0075471_103847882 7Ga0102917_12484872 8Ga0114340_10019983 9Ga0114350_10744261 10Ga0114969_1000032324 11Ga0151516_1012861 12Ga0138292_13159522 13Ga0181346_11807903 14Ga0211732_10009411 15Ga0228701_10008324 16Ga0315904_106194482 17Ga0315904_108628612 18Ga0315902_103424402 19Ga0334996_0006518_7154_7306
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1Ga0114977_1000050231 2FwDRAFT_104338442 3B570J40625_1006382982 4JGI25922J50271_100001203 5Ga0066222_13377662 6Ga0007756_114361052 7Ga0068876_101172682 8Ga0068876_102432421 9Ga0075471_100633772 10Ga0102917_12484872 11Ga0102865_10835152 12Ga0105748_101604632 13Ga0114340_10019983 14Ga0114340_10191992 15Ga0114340_10220403 16Ga0114346_12280431 17Ga0114354_10007875 18Ga0114363_11781942 19Ga0104242_10611912 20Ga0114978_107367962 21Ga0114969_1000032324 22Ga0114974_108084262 23Ga0151516_1012861 24Ga0157627_10633961 25Ga0172373_100046934 26Ga0181359_10322962 27Ga0211732_10009411 28Ga0211726_107183952 29Ga0208050_10206182 30Ga0207939_10020733 31Ga0222712_100245025 32Ga0181354_11577792 33Ga0228701_10008324 34Ga0214917_1000074345 35Ga0214921_102268982 36Ga0208966_10428822 37Ga0209596_100008492 38Ga0315907_102595481 39Ga0315904_106194482 40Ga0334996_0006518_7154_7306 41Ga0335031_0642482_130_279 42Ga0335007_0279251_707_856
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01476	LysM	15.65
PF12705	PDDEXK_1	1.74
PF07659	DUF1599	0.87
PF01807	zf-CHC2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.21 %
Unclassified	root	N/A	63.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	12.93 %
Unclassified	root	N/A	63.79 %
Viruses	superkingdom	All Organisms → Viruses	23.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.93 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Unclassified	root	N/A	63.79 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.90 %
Unclassified	root	N/A	63.79 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Unclassified	root	N/A	63.79 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	19.83 %

Name	Rank	Taxonomy	Distribution
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	6.90 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Unclassified	root	N/A	63.79 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Pseudoalteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae	6.90 %
Unclassified	root	N/A	63.79 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	19.83 %

Name	Rank	Taxonomy	Distribution
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	6.90 %
Unclassified	root	N/A	63.79 %

Name	Rank	Taxonomy	Distribution
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Unclassified	root	N/A	63.79 %
unclassified Pseudoalteromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas	6.90 %

Name	Rank	Taxonomy	Distribution
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	19.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.45 %
Pseudoalteromonas sp. TMED43	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. TMED43	6.90 %
Unclassified	root	N/A	63.79 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013131\|Ga0172373_10004693	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	19079	Open in IMG/M
3300000882\|FwDRAFT_10433844	Not Available	703	Open in IMG/M
3300002298\|B570J29599_1001640	Not Available	1658	Open in IMG/M
3300002835\|B570J40625_100638298	Not Available	966	Open in IMG/M
3300003277\|JGI25908J49247_10062444	Not Available	947	Open in IMG/M
3300003413\|JGI25922J50271_10000120	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	22003	Open in IMG/M
3300003490\|JGI25926J51410_1009202	Not Available	2055	Open in IMG/M
3300003491\|JGI25924J51412_1001748	Not Available	4094	Open in IMG/M
3300004240\|Ga0007787_10482482	Not Available	620	Open in IMG/M
3300004460\|Ga0066222_1337766	Not Available	542	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.41%
Plants	Host-Associated → Plants	0.86%
Terrestrial	Environmental → Terrestrial	1.72%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.86%
Freshwater	Environmental → Aquatic → Freshwater	86.21%
Leaf	Host-Associated → Plants → Leaf	0.86%
Marine	Environmental → Aquatic → Marine	11.21%
Soil	Environmental → Terrestrial → Soil	0.86%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Coastal	Environmental → Aquatic → Marine → Coastal	6.03%
Creek	Environmental → Aquatic → Freshwater → Creek	0.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.45%
Lake	Environmental → Aquatic → Freshwater → Lake	50.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.41%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	12.07%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.45%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.45%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	49.14%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.97%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	12.07%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.72%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.86%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.45%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.72%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.86%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	3.45%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.93%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	12.07%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.45%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.86%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.86%
Freshwater And Marine	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine	0.86%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	17.24%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	14.66%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.86%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	14.66%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000882	Freshwater microbial communities from the Columbia River	Environmental	Open in IMG/M
3300002298	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental	Open in IMG/M
3300003490	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
FwDRAFT_104338442	3300000882	Freshwater And Marine	MIGKQGGHVKAPTSTAIMGKKPSGAVKGGGMVKQGVTPKPIAGNKNKLK*
B570J29599_10016402	3300002298	Freshwater	MFGKQGKSAKAPVHPGHAGKKNSGSVKGGGLVKQGVTPKGIKGNNNKVK*
B570J40625_1006382982	3300002835	Freshwater	MFGKQGKSAKAPTATAMMGKKPAGKIVGGGMVKQGVTPKGIKGNNNKVK*
JGI25908J49247_100624442	3300003277	Freshwater Lake	MFGKQGKSAKAPTATAMIGKKNSGGVKGGGMIKQGVTPKGIKGNNNKVR*
JGI25922J50271_100001203	3300003413	Freshwater Lake	MFGKQGKPAKAPVGSAIHGKKNGGAVKGGGMVKQGVTPKGIKGNNNKLK*
JGI25926J51410_10092021	3300003490	Freshwater Lake	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGIKGNNN
JGI25924J51412_10017481	3300003491	Freshwater Lake	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGIKGNNNKVK*
Ga0007787_104824821	3300004240	Freshwater Lake	MFGKQGKPAKAPTHSGHEGKKNGGKVVGGGMVKQGMTPKGIKGNKNKL
Ga0066222_13377662	3300004460	Marine	MAMGKQGGIAKANVKPAMPGSKPGGKVVGGGMVKKGMTPKGIPGNKKSGK*
Ga0007758_107326561	3300004790	Freshwater Lake	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGIKG
Ga0007756_114361052	3300004795	Freshwater Lake	MFGKQGKPAKAPTHSGHAGKKNGGKVVGGGQVKQGVTPKGIKGNNNKLK*
Ga0068876_101172682	3300005527	Freshwater Lake	MFGKQGKAAKAPTSSAIMGKKNSGSVKGGGNVKQGVTPKGIKGNKNKLK*
Ga0068876_102432421	3300005527	Freshwater Lake	MFGKQGKAAKAPVHPGHAGKKNGGKSVGAGMVKQGVTPKGTKGNNNKLK*
Ga0078894_100019973	3300005662	Freshwater Lake	MFGKQGKAAKAPTSMAMQGKKPAGKGVGLGAVQQGTTPKGIKGNKNKLK*
Ga0078894_105919222	3300005662	Freshwater Lake	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNNNKLK*
Ga0075471_100633772	3300006641	Aqueous	MFGKQGKMAKAPTGSAIMGKKPAGKGVGLGQVQQPKAPKTIKGSKNKLK*
Ga0075471_103847882	3300006641	Aqueous	MFGKQGKPAKAMVGKNIMGKKPGGSAKGAGMVKKGVTPKGIKGNNNKLK*
Ga0102917_12484872	3300007590	Estuarine	MFGKQGKAAKANVSTAIMGKKNAGKVVGAGGVKQGTLSKGTKGNTNKLK*
Ga0102921_13777102	3300007603	Estuarine	MFGKQGKPAKAPTSTAMSAKKNGGKSVGAGMVKQGVTPKGIKGNNNKLK*
Ga0102865_10835152	3300007639	Estuarine	MFGKQGKAAKAPTSTAMSAKKNSGKTVGAGGVKQGVTPKGIKGNNNKLK*
Ga0105746_12448081	3300007973	Estuary Water	MFGKQGKAAKANVSTAHMGKKNAGKVVGAGGVKQSTLSKGTKGNTNKLK
Ga0105746_13311132	3300007973	Estuary Water	GKQGKAGKAPTSTAIMGKKPAGKVIGGGMVKQGVLSKGTKGNTNKLK*
Ga0105748_101604632	3300007992	Estuary Water	MFGKQGKAGKAPVGTAIMGKKPAGKVVGGGMVKQGVTTKGTKGNNTKAK*
Ga0105748_105631901	3300007992	Estuary Water	MFGKQGKAAKANVLTAIMGKKPAGKVVGGGMVKQGVTPKGIKG
Ga0108970_101128582	3300008055	Estuary	MFGKQGKAGKAPTSTAIMGKKNKGGVIGAGGVKQGTLSKGTKGNTNKLK*
Ga0114340_10019983	3300008107	Freshwater, Plankton	MIGKQGKPAKAPTASAMMGKKNGGAVKGGGNVKQGITPKGIKGNTNKLK*
Ga0114340_10106765	3300008107	Freshwater, Plankton	MFGKQGKPGKAPTSSAMVGKKNGGAVKGGGMVKQGVTPKGIKGNKNKLK*
Ga0114340_10191992	3300008107	Freshwater, Plankton	MFGKQGKPAKAPTSMAIQGKKPAGKGVGMGQVQQGTTPKGIKGNKNKLK*
Ga0114340_10201462	3300008107	Freshwater, Plankton	MFGKQGKAAKAPTSVAMQGKKPAGKGVGLGAVQQGTTPKGIKGNKNKLK*
Ga0114340_10220403	3300008107	Freshwater, Plankton	MFGKQGKPAKAPTSKEMVGKKNSGAVKGGGMVKQGVTPKGIKGNNNKLK*
Ga0114340_11448132	3300008107	Freshwater, Plankton	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGAVKQGVTPKGIKGNNNKLK*
Ga0114343_11071422	3300008110	Freshwater, Plankton	MFGKQGKPAKAPTSSAMPGKKNGGKVVGGGMVKQGTTPKGIKGNNNKLK*
Ga0114343_11319512	3300008110	Freshwater, Plankton	MFGKQGKAAKAPTSTAKSAKKNSGKTVGAGGVKQGVTPKGIKGNNNKLK*
Ga0114346_10926392	3300008113	Freshwater, Plankton	MFGKQGKPAKAPTSTAMSAKKNSGKTVGAGMVKQGVTPKGIKGNNNKLK*
Ga0114346_11434582	3300008113	Freshwater, Plankton	MFGKQGKAAKAPTSGAIMGKKPAGKGVGLGAVKQGVTPKGIKGNKNKLK*
Ga0114346_12280431	3300008113	Freshwater, Plankton	MFGKQGKPAKAPVHPGHAGKKNSGTAKGGGMVKQGVTPKGIKGNNNKLK*
Ga0114350_10416752	3300008116	Freshwater, Plankton	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNKNKLK*
Ga0114350_10744261	3300008116	Freshwater, Plankton	SSAMVGKKNGGAVKGGGMVKQGVTPKGIKGNKNKLK*
Ga0114354_10007875	3300008119	Freshwater, Plankton	MFGKQGKPAKAPVGSPIMGKKPAGKGVGMGQVQQGTTPKGIKGNKNKLK*
Ga0114355_11117342	3300008120	Freshwater, Plankton	MFGKQGKAAKAPTSMAMQGKKPAGKGVGLGQVQQGTTPKGIKGNKNKLK*
Ga0114363_10508402	3300008266	Freshwater, Plankton	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVEQGVTPKGIKGNN
Ga0114363_11781942	3300008266	Freshwater, Plankton	MIGKQGKSAKANVGKAIMGKKPGGAVKGGGNVKQGITPKGIKGNKNKLK*
Ga0104242_10224602	3300008962	Freshwater	MFGKQGKSAKANVGKAIMGKKPGGAVKGGGNVKQGVTPKGIKGNKNKLK*
Ga0104242_10611912	3300008962	Freshwater	MFGKQGKPAKANVGSPIMGKKSGGSAKGLGMVKKGVTPKGIKGNNNKLK*
Ga0114973_101125732	3300009068	Freshwater Lake	MFGKQGKAGKAPTSTAIMGKKNAGKVVGAGGVKQGTLSKGTKGNTNKLK*
Ga0114968_101011462	3300009155	Freshwater Lake	MFGKQGKAGKAPVGTAIMGKKPAGKIVGGGMVKQGVTSKGTKGNNTKAK*
Ga0114968_101824222	3300009155	Freshwater Lake	MFGKQGKSAKAPTSTAIMGKKNGGKVVGGGMVKQGTLSKGTKGNNNKLK*
Ga0114977_1000050231	3300009158	Freshwater Lake	MFGKQGKAAKANVSTAIMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKLK*
Ga0114978_107367962	3300009159	Freshwater Lake	MFGKQGKPAKAPVGVKIDGKKPGGKVVGGGMVKQGVTPKGIKGNTNKLK*
Ga0114970_101699072	3300009163	Freshwater Lake	MFGKQGKSAKAPTSTAIMGKKNGGKVVGGGMVKQGTLSKGTKGNTNKLK*
Ga0114969_1000032324	3300009181	Freshwater Lake	MFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK*
Ga0114974_101233662	3300009183	Freshwater Lake	MFGKQGKAGKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGTKGNSNKAK*
Ga0114974_108084262	3300009183	Freshwater Lake	MFGKQGKVAKANVKQAIMGKKNKGGVIGAGGVKQGTLSKGTKGNTNKLK*
Ga0114972_104556412	3300009187	Freshwater Lake	MFGKQGKVAKANVKQAIMGKKPAGKVIGGGMVKQGVLSKGTKGNTNKLK*
Ga0114982_12472762	3300009419	Deep Subsurface	AMSAKKNSGKSVGGGMVKQGVTPKGIKGNNNKLK*
Ga0114967_101570342	3300010160	Freshwater Lake	MFGKQGKAGKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGTKGNNTKAK*
Ga0133913_111134381	3300010885	Freshwater Lake	QGKSAKAPTSTAIMGKKNGGKVVGGGMVKQGTLSKGTKGNNNKLK*
Ga0133913_115055802	3300010885	Freshwater Lake	MFGKQGKPAKAPVGVKIEGKKPGGKVVGGGMVKQGITPKGIKGNTNKLK*
Ga0151516_1012861	3300011116	Freshwater	MIGKQGKSAKANVGKPIMGKKPAGAAKGGGMVKFGITPKGVKGNKAKIK*
Ga0153801_10723272	3300012017	Freshwater	MFGKQGKSAKAPVGTAIMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKVK*
Ga0157627_10633961	3300012706	Freshwater	MFGKQGKAAKAPTSGAIMGKKPAGKGVGLGMVKQGLTPKGIKGNKNKLK*
Ga0138292_13159522	3300012777	Freshwater Lake	STAIMGKKNAGKVVGAGGVKQGTLSKGTKGNTNKLK*
(restricted) Ga0172373_100046934	3300013131	Freshwater	MIGKQGKSAKAPTSSAIMGKKNSGAVKGGGLVKFGITPKGIKGNNNKIK*
Ga0181364_10626722	3300017701	Freshwater Lake	MFGKQGKVAKANVKQAIMGKKPAGKVIGGGMVKQGVLSKGTKGNT
Ga0181343_10202192	3300017766	Freshwater Lake	MFGKQGKAAKAPTSMAMQGKKPAGKGVGLGAVQQGTTPKGIKGNKNKLK
Ga0181346_11807903	3300017780	Freshwater Lake	MFGKQGKVAKANVKQAIMGKKNKGGVIGAGGVKQGTLSKGTK
Ga0181359_10000112	3300019784	Freshwater Lake	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGIKGNNNKVK
Ga0181359_10322962	3300019784	Freshwater Lake	MFGKQGKAGKAPTSTAIMGKKNKGGVIGGGMVKQGVLSKGTKGNTNKLK
Ga0211732_10009411	3300020141	Freshwater	SITKEKQMFGKQGKVAKAPTSTAMSGKKNGGKVVGGGMVKQGVTPKGIKGNNNKLK
Ga0211726_107183952	3300020161	Freshwater	MFGKQGKSAKAPVGTVIMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKVK
Ga0211735_104355562	3300020162	Freshwater	MFGKQGKAGKAPTSTAIMGKKNAGKVVGAGGVKQGTLSKGTKGNTNKLK
Ga0211729_100634472	3300020172	Freshwater	MFGKQGKAAKAPTSTAMSAKKNSGKTVGAGGVKQGVTPKGIKGNNNKLK
Ga0208050_10206182	3300020498	Freshwater	MFGKQGKAAKANTSTPIMGKKPAGKVVGGGMVKQGTLSKGTKGNSNKLK
Ga0208235_10364402	3300020530	Freshwater	MFGKQGKPAKAPTSTAMSAKKNSGKTVGAGMVKQGVTPKGIKGNNNKLK
Ga0207939_10020733	3300020536	Freshwater	MFGKQGKSAKAPVHPGHAGKKNSGSVKGGGLVKQGVTPKGIKGNNNKVK
Ga0222712_100245025	3300021963	Estuarine Water	MFGKQGKMAKAPTSGAIMGKKPAGKGVGLGQIDVPKAPKTIKGNNQKLK
Ga0222712_100604092	3300021963	Estuarine Water	MFGKQGKAAKANVSTAHMGKKNAGKVVGAGGVKQGTLSKGTKGNTNKLK
Ga0181353_10079712	3300022179	Freshwater Lake	MFGKQGKPAKAPVGSAIHGKKNGGAVKGGGMVKQGVTPKGIKGNNNKLK
Ga0181354_11577792	3300022190	Freshwater Lake	MFGKQGKVAKANVKQAIMGKKPAGKVIGGGMVKQGVLSKGTKGNTNKLK
Ga0228701_10008324	3300022746	Freshwater	MFGKQGKPAKAIMGATTVVPKGKPGGKAMGAGNVKQGLTPKGIKGNKNKLK
Ga0214917_1000074345	3300022752	Freshwater	MFGKQGKPAKANVGSPIMGKKNGGAVKGGGNVKQGIITKGTKGNKNKLK
Ga0214917_100690822	3300022752	Freshwater	MFGKQGKSAKANVGKAIMGKKPGGAVKGGGNVKQGVTPKGIKGNKNKLK
Ga0214921_102268982	3300023174	Freshwater	MFGKQGKPAKASVGSPIMGKKNGGSVKGGGNVKQGITPKGIKGNSNKLK
Ga0244776_101341063	3300024348	Estuarine	HVKAPTSTAIMGKKPSGAVKGGGMVKQGVTPKPIAGNKNKLK
Ga0208966_10428822	3300027586	Freshwater Lentic	MFGKQGKSAKAPTATAMVGKKNSGGVKGGGMIKQGVTPKGIKGNNNKVR
Ga0209553_10526972	3300027688	Freshwater Lake	MFGKQGKSAKAPTATAMIGKKNSGGVKGGGMIKQGVTPKGIKGNNNKVR
Ga0209297_10005793	3300027733	Freshwater Lake	MFGKQGKAAKANVSTAIMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKLK
Ga0209596_100008424	3300027754	Freshwater Lake	MFGKQGKMTKAPTSSAIMGKKPAGKGIGLGQVDVAKAPKTIKGSKNKLK
Ga0209596_100008492	3300027754	Freshwater Lake	MFGKQGKSAKAPTSTAIMGKKNGGKVVGGGMVKQGTLSKGTKGNNNKLK
Ga0209768_103061692	3300027772	Freshwater Lake	MFGKQGKSAKAPVGTAIMGKKPAGKIVGGGMVKQGVTPKGTKGNNNKVR
Ga0307377_105304672	3300031673	Soil	MFGKQGKPAKAPTSMAMQGKKPAGKGVGLGMVKQGATPKGIKGNKNKLK
Ga0315907_100088158	3300031758	Freshwater	MIGKQGKSAKAPTSSAMMGKKPAGAVKGGGMVKFGITPKGIKGNNNKIK
Ga0315907_102595481	3300031758	Freshwater	MFGKQGKPGKAPTSSAMVGKKNGGAVKGGGMVKQGVTPKGIKGNKNKLK
Ga0315907_104170202	3300031758	Freshwater	MFGKQGKAAKAPTSSAIMGKKNSGSVKGGGNVKQGVTPKGIKGNKNKLK
Ga0315907_106351912	3300031758	Freshwater	KAPTSSAMVGKKNGGAVKGGGMVKQGVTPKGIKGNKNKLK
Ga0315907_106476182	3300031758	Freshwater	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNKNKLK
Ga0315908_100022495	3300031786	Freshwater	MFGKQGKPAKAPVGSPIMGKKPAGKGVGMGQVQQGTTPKGIKGNKNKLK
Ga0315900_101226371	3300031787	Freshwater	MFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNKNKL
Ga0315900_111168341	3300031787	Freshwater	EKQMFGKQGKPAKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNNNKLK
Ga0315909_100685522	3300031857	Freshwater	MIGKQGKSAKANVGKAIMGKKPGGAVKGGGNVKQGITPKGIKGNKNKLK
Ga0315909_106505802	3300031857	Freshwater	MFGKQGKAAKAPTSMAMQGKKPAGKGVGLGQVQQGTTPKGIKGNKNKLK
Ga0315904_106194482	3300031951	Freshwater	MIGRQGKAAKAMVGTPIMGKKPAGKVVGAGGVKIAATPKGIKGNNKKIK
Ga0315904_108628612	3300031951	Freshwater	AKAPTSTAMSAKKNSGKTVGGGMVKQGVTPKGIKGNNNKLK
Ga0315901_105092292	3300031963	Freshwater	EKHMFGKQGKAAKAPTSMAMQGKKPAGKGVGLGQVQQGTTPKGIKGNKNKLK
Ga0315274_108755172	3300031999	Sediment	MFGKQGKAGKAPTSTAIMGKKNKGGVIGAGGVKQGTLSKGTKGNTNKLK
Ga0315902_103424402	3300032093	Freshwater	MFGKQGKPAKAPTSTAMSAKKNGGKSVGAGMVKQGVTPKGIKGN
Ga0334994_0165313_497_646	3300033993	Freshwater	MFGKQGKAAKAPVHPGHAGKKNGGKVVGGGAVKQGVTPKGTKGNSNKLK
Ga0334996_0006518_7154_7306	3300033994	Freshwater	MGMGKQGGKGTAPVGKPIMGGKPGGKVVGGGNVMKGVTPKGIKGNSNKAK
Ga0334996_0386790_505_654	3300033994	Freshwater	MIGKQGKPGKAPTSSAMVGKKNGGAVKGGGNVKQGITPKGIKGNTNKLK
Ga0334986_0302855_378_527	3300034012	Freshwater	MFGKQGKSAKAPTATAMMGKKPAGKVVGGGMVKQGVTPKGIKGNNNKVK
Ga0335027_0003061_7716_7865	3300034101	Freshwater	MFGKQGKSAKAPTATAMMGKKPGGKVVGGGMVKQGVTPKGIKGNNNKVK
Ga0335030_0051782_2125_2274	3300034103	Freshwater	MFGKQGKPGKAPTSSAMVGKKNGGAVKGGGMVKQGITPKGIKGNKNKLK
Ga0335031_0002916_1679_1828	3300034104	Freshwater	MFGKQGKAAKAPTSGAIMGKKPAGKGVGLGAVKQGVTPKGIKGNKNKLK
Ga0335031_0642482_130_279	3300034104	Freshwater	MFGKQGKPAKAMVGKNIMGKKPGGSAKGAGMVKKGVTPKGIKGNNNKLK
Ga0335058_0675127_429_572	3300034121	Freshwater	GKQGKSAKAPVHPGHAGKKNSGSVKGGGLVKQGVTPKGIKGNNNKVK
Ga0335007_0279251_707_856	3300034283	Freshwater	MFGKQGKSAKAPTSMAMQGKKPAGKGVGLGAVKQGTTPKGIKGNKNKLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters