Scaffold Ga0105104_10000047

Overview

Basic Information

• Taxon OID: 3300009168
• Scaffold ID: Ga0105104_10000047
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78300
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (78.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045903	Metagenome	152	N
F052917	Metagenome / Metatranscriptome	142	Y
F059465	Metagenome / Metatranscriptome	134	Y
F073623	Metagenome	120	N
F081801	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105104_1000004732	F081801	AGGCGG	VTGLLAILVLLSTDAGRLEPPDGGVPAPRASRSAEDEEVIQNLDLLEHLAEGQALELMLELEAQRAKAER*
Ga0105104_1000004734	F073623	N/A	MLFLVGTTSAGRAQDVPIPPSVLLPNYDRVQPGLIEALEAGAFIARARNAPAVAYNPAGISLSERTSLNASTQGYWLTVLGGSGFEHASPVSNFASMPSFLGIVLGRDLVGWEKVRLGFAVVTPVHWDQSVIATTEPAPGQRASYSVHSSISTTTPTVSVGWALSPSVRLGASIEFPYTSLSDQGQLSGELTTASTSQGSIRNVTLGGSTLDVVGVVGAQWQPLRWLQLGLVFRSPGLKILSTGSLDIESLTTLPSGTRHTYFSDRDARFEYRTPMEVSLGAAFEVGRMQFEVDLRWHDGTHTYPLFSSTEQGRVVDTSSGAPVVSSFDFPGVPYRARPVLNGSVGAHFTLTQAVNLSAGVYLDQSPVDLLGQGFRRVDLIGFRTGVGLQLGPFGASVGIGWEYGKATDDLAPDAAQSQREELTLNTFSVLFSVSYKF*
Ga0105104_1000004742	F045903	GGAG	MLTERDVIMRLVRQLAELLAAAMRLRRAGKRDEALKQIDAITGRLTGMDAGALCMFGEAPLAGLPRELKVPLACVLRSRARLLRDAGRDAEAHQTFRAARLLVRNARPSG*
Ga0105104_1000004753	F059465	AGG	VKFPSLLRVRERLMAPLGHTDQAERLVVEAFRTLSTLCTRLADMVESQRLTRAGYHDQGRFLERLDRSPHPDQDGSQPR*
Ga0105104_1000004757	F052917	AGG	MPLLSRLLALAGALALAASAVGCSYEHGPLADKPDTTSLGAAVRWGVAYVSTSDGVAGLPADPNAILPGTVQGETSPLTTRVQPPMTLLGTREDWSFGQTVGPQTGWAMNVWTSGPNLPVEPWNMALESPAGEGGGQGHGAPKAH*