Scaffold Ga0114975_10001394

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10001394
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17230
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F042328	Metagenome	158	Y
F044503	Metagenome	154	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000139416	F005529	N/A	MARGLPKSKLDYSLEIRYKESSGKWSAWMNKGKGSFQSIEIVQRQIRLLAASYYGREKEIRFEWNGWLCDFAGLPTGEVISLK*
Ga0114975_100013942	F024318	N/A	MSHYLYLGKFIQRPGDLAPKGVRSTYQTEKLPFNETFERLWQLASTKA*
Ga0114975_1000139421	F042328	N/A	MEAKQKVRLGNGKKRSDSWLTAAICLSDCHAHAYTYNGKTYINVSINIYDKPNDFGKDVAINLNDYKKEENNNPQVNKVPTATYQDEDYDLPF*
Ga0114975_1000139422	F065775	N/A	MSNFQLNFNSAKKVISVTLEDEEQGIFDLAYLFKKLLDDAGIPNKLEEKDITPVEPMQVANQKLD*
Ga0114975_100013947	F044503	N/A	MRRRNLTETEKELIFERWQDRIPTKVIALELGVTYACVFFHLKRRYLVG*
Ga0114975_100013949	F008073	N/A	MREIILKHLQKMEFVCGLKQFKEYKESDAIELVECIHTLFKSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSGWINQYYAHHQSQIVQEVQAMKRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKMQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEITVGAKSKNKIWKLFILESIKENRNLDKLI*