Scaffold Ga0114978_10010760

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10010760
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7048
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F033352	Metagenome / Metatranscriptome	177	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1001076011	F005502	AGGAG	MRMLLSILALFGFSTSKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLGRKIRLIGTAWEWKAVDTGTAVKSKKASRGKLPVVDVFAASEKQFNWMRLPKVATVEIRE*
Ga0114978_1001076012	F016963	GAGG	MIEVLPEETTHDQLLNRVRSLSRQLAEAKAALAASEARENDLIDRIRSGL*
Ga0114978_1001076015	F033352	AGG	MTDLTKFRLIENIEVMACRNSAERVVKALNRGEVQQAKDLARKHEIAWHVTDREFQTLNQPHRNNDFCDDE*
Ga0114978_100107607	F081048	N/A	MSVKRLTWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAKVYQKRDLEKKK*
Ga0114978_100107609	F020510	N/A	MSLQELLTMFSARVIGTYTPEQYANCVREARANRMRWGMGQW*