Scaffold Ga0114968_10007290

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10007290
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8106
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F072095	Metagenome	121	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100072901	F072095	N/A	ATASQSYGSAQLSQTTALIDLQTKHRELRNRLERIEDILKGLIEKQGASL*
Ga0114968_1000729010	F005502	AGG	MRVAACIAALLGLANSQGANVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWLAVDTGTAVKSKKASRGKLPVVDVFAASESQFKAMRLPRVATVEVMK*
Ga0114968_1000729015	F081048	N/A	VGNGAVVSVKRLTWQIEILERAKKSLADGRVVVTRCRIDLALHIAKEMLKRAKVYQKRDLEKKK*
Ga0114968_1000729017	F007747	AGGAG	MKDLGKITFGKSRPAPKQILVDVTYDAKTAKALHAFGLKQLKKDEEAVIEYVIVKALKAFAKK*
Ga0114968_100072909	F016963	AGGA	MIEILPEQSTNEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRGGL*