Scaffold Ga0114963

Basic Information
Taxon OID	3300009154 Open in IMG/M
Scaffold ID	Ga0114963_10004510 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009154 Open in IMG/M

Scaffold ID

Ga0114963_10004510 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9573
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

9573

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (72.73%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F033352	Metagenome / Metatranscriptome	177	N
F043823	Metagenome	155	N
F048834	Metagenome	147	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000451010	F016963	GAGG	MIEVLPEETTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRSGL*
Ga0114963_1000451013	F033352	N/A	MTDLLKFRLIENIEVLACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRTNDFCDDE*
Ga0114963_1000451020	F043823	N/A	MKKAKTNLTIDPKVKRSGERLAKKGGLSLSAYITTLLVKELEKQKRR*
Ga0114963_1000451021	F048834	N/A	VALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGTERKVFSIKIKISQRGGKIGHCRRVPHYRLAAVKTGKT*
Ga0114963_100045104	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKELKKDPEAVVEYVIAKALKGFEKK*
Ga0114963_100045106	F081048	AGG	VSVKRLTWQIEILERAKKSLIDGRLIMARSRLDMALHIAKELLKRAQTYQKRDLEKKK*
Ga0114963_100045107	F020510	AGGCGG	VSLQDLLTMFSARVIGTYTPEQYANCVREARANRMRWGIGQW*
Ga0114963_100045109	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVMK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114963_10004510

Overview

Ecosystem & Geography

Associated Families

Sequences