Scaffold Ga0114980_10001751

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001751
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15433
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (74.42%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F027180	Metagenome / Metatranscriptome	195	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F061858	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000175113	F007525	GGAG	MTSLTGVTVTYTEVIPTSKQMAEFYVWQEGYESYATIRYEDRVVEVERGGEMHLTLPNLVNGELSDEGATIVRYSDDLEAAGINDDIQFMQYLKTISNSGFQVYRMNPWWEVFSHNEDMGEVYDTFYDAVNGGIDYILDDRNW*
Ga0114980_1000175118	F030094	GAGG	MKLRGIFEGTFESVWSMEVPQTEWESFLRHHPDFDENDRDDIQEMWNHFKELGCYDECDDTVDTDVIMTGIETYGVEVEIN*
Ga0114980_1000175119	F016662	GGAG	MYLVAVTEVIYSEEYIIKEMLATGDYGVHGHPISHEAIVEFVKDREWQIEHHLFLDRYKDVPVHIAIKDEDGTDVFFAKNKIEVK*
Ga0114980_1000175120	F043404	AGG	MYQPTKRTKMIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR*
Ga0114980_1000175122	F008496	AGGAG	VDYPIPATVTQMPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQESNSRNSKAVDKLKDYLVENYDEIGEEHATEIANIFSIDLSKEVEVEFTVTIKATISMPVNEEVSDLSIYDFDITLESNESKYEVQDFDADIDSIDERY*
Ga0114980_1000175130	F027180	N/A	MKLFKKKEVEDTFTKLDRLMSEMATSDTYIEYLREREGM*
Ga0114980_1000175141	F061858	AGGAG	MKIVKNKIDGTFLIGVTFSNNFNYRTKRKDTSLIFDLGSNSFAFVLRGEY*