Scaffold Ga0114980_10000845

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000845
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21868
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (65.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009887	Metagenome	311	Y
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F024787	Metagenome	204	N
F026555	Metagenome	197	N
F026865	Metagenome / Metatranscriptome	196	N
F036148	Metagenome	170	N
F081333	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000084512	F081333	AGGAG	MKYIPSVLQVIGSLVTVAGVATFNPVVAVILSGVFLVLFGIALENRGK*
Ga0114980_1000084518	F026555	N/A	MTKFNYHKAMREGHGYNLYVADLLQHFGVPQVDVPDFSIATTHDEIRDKTLNEKDVIVGDLVLEVKSSSRSFTNADDFPFNPVIIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTSTKYDWTIEKYYDGYRKIEERFYLVKKRHCRPFIEMVDVLLERANERTNQM*
Ga0114980_1000084519	F009887	GGAG	MGDMEMIDANGIKATFTENGVELDIVPLSECCEVCNDPRMLNINGVRKCAGCGCINHIDYKNDQI*
Ga0114980_100008452	F020143	AGG	MLAPDRSLKAIYVENLDAVMDKMKKMDADLQKEFRKELNKAVKPVAKLAKSFVPHSPFPGWRDVEPTYPPAWGWANDTVHRGRTFGDAKQSRWKWSQSEVVAGIKLSSAKTKVQRVKGTTFSVTALAIVNKSVPGIIYELAGFGTSKSRSRTRRVSRNRNASESFIGKLQGTANSGAYKEKRLIYRASYQLGEQVNANLYGVLKKYLGENFRG*
Ga0114980_1000084521	F024787	AGGA	MNSEIYGWLVTITLFTLVALLIGVTWIVAVESGYNKGFKAGYKRGTVDTKQTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK*
Ga0114980_1000084527	F036148	N/A	MATKKPRKAPQRRRRAPRKAEALNKLENHYITLNELFKAAKAAGFSHDVAFWLITEPGASMPDWINPGSQPTEIIPRIDPTEDEDED*
Ga0114980_100008453	F026865	N/A	VATGISPKDLLEVDPAIYSAIKAILQERHFNNKKATVRRK*
Ga0114980_100008454	F011143	AGAAGG	MHKIEIVKKDGKKITYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFSDEYINQYLDIDLLYDSKNG*