Scaffold Ga0115566_10372374

Overview

Basic Information

• Taxon OID: 3300009071
• Scaffold ID: Ga0115566_10372374
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 828
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032992	Metagenome	178	Y
F093724	Metagenome	106	Y
F093848	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115566_103723742	F093724	AGAAG	MDMPYYFDEFATEDIQMWVRECGKDMPKAKLRGDLTELEILENVVRSGSKELLRRYREENE*
Ga0115566_103723743	F093848	GGA	MNEYVENSLYDVLDKLSTKLVQLYYLNSWELDDKDGMRVSENILYMRNLKNE*
Ga0115566_103723744	F032992	GAGG	MNKSMDPNFRYYDCKNIVDEITGIEQENLEIMVAVPKIDLSTAENRQENIVAISGIVEEQYRRGVESFTYEEYTGQ*