NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066256_1059050

Scaffold Ga0066256_1059050


Overview

Basic Information
Taxon OID3300009070 Open in IMG/M
Scaffold IDGa0066256_1059050 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameCape Town, South Africa
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088268Metagenome109N
F093254Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066256_10590502F088268GAGGMPTSAEIVEYLASEGLLDIQPWRDAGALSAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0066256_10590504F093254N/ARRAIMSDTSYRKMMAALRERTEGDFTLLSQDAADALSLARWREYPNWAKEEPIVESAVPEIIYDAIHGDGTAASCSYETLRRAALDYLEIVTRDDWNCP*

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