Scaffold Ga0114973_10054981

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10054981
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2341
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F009143	Metagenome / Metatranscriptome	322	Y
F024549	Metagenome / Metatranscriptome	205	Y
F029434	Metagenome / Metatranscriptome	188	Y
F063685	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1005498110	F024549	GGA	MYKLFTYYDGNLEFTHQFADALEAFEAFARCKDWGFANELATYNLEMPTGKMYTKNFYRSGLVVMK*
Ga0114973_100549812	F009143	AGG	MMTKWDTIQADVADAYAYLDEEEAYNKALAEGVEFGSDEYDEDELSKSLTLDWEAYE*
Ga0114973_100549813	F063685	GGAGG	MTIELGDYGFMLDTEWAYVALSWQLLITSALLGIAYKFYLIRKAK*
Ga0114973_100549814	F001562	GGCGG	MTKSQFEKDLEIKESFCDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLAELENE*
Ga0114973_100549818	F029434	AGGAG	MNKYTFGVWLDIDAEDEEMALSLFDSVVKHTFVSDSYCFEWKEVANEIAV*