Scaffold Ga0114973_10007885

Overview

Basic Information

• Taxon OID: 3300009068
• Scaffold ID: Ga0114973_10007885
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7051
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F033352	Metagenome / Metatranscriptome	177	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114973_1000788510	F020510	GGAGG	VSLADLLAMFSARVIGTYTPEQYANCVQEARANRMRWGMGQW*
Ga0114973_1000788511	F081048	GGA	VVSVKRLTWQIEILERAKKSLADGRVVVSRCRIDLALHIAKEMLKRAKVYQKRDLEKKK*
Ga0114973_100078855	F033352	N/A	MTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHITDREFQTLNQPHRTNDFCDDE*
Ga0114973_100078858	F016963	GAGG	VIEVLPEESIHEQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL*
Ga0114973_100078859	F005502	AGG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVVK*